MoG+ -Mouse Genome database with high added value-

BAC Information

BAC name
Region	Chromosome -
Gene	search by nearby gene name.
Format	rows / page	Page	1

BAC

Clone Name	MSMg01-489F17
Chromosome	18 (Build37)
Map Location	10,393,853 - 10,394,416
singlet/doublet	singlet
Overlap gene	AK220484
Upstream gene	Ccny, LOC665176, LOC665184, EG639618, LOC100039755, Cetn1, LOC225155, Colec12, LOC665111, LOC100039787, EG433161, Thoc1, Usp14, Rock1, LOC100039978, LOC635344, LOC435554
Downstream gene	LOC621832, Esco1, Snrpd1, LOC100039880, Abhd3, Mib1, LOC665296, 1010001N08Rik, Gata6
Link	Open Mouse BAC browser

Click to get alignment info.

name	Ccny (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:67974 MGI:1915224
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC665176 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:665176
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST, 4 Proteins pseudo : _no_value

name	LOC665184 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:665184
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 Proteins pseudo : _no_value

name	EG639618 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:639618 MGI:3646110
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 Proteins pseudo : _no_value

name	LOC100039755 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100039755
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 17 ESTs

name	Cetn1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:26369 MGI:1347086
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC225155 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:225155
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 Proteins pseudo : _no_value

name	Colec12 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:140792 MGI:2152907
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC665111 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:665111
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 21 Proteins pseudo : _no_value

name	LOC100039787 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100039787
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 4 Proteins pseudo : _no_value

name	EG433161 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:433161 MGI:3644023
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 25 ESTs, 5 Proteins

name	Thoc1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:225160 MGI:1919668
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Usp14 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:59025 MGI:1928898
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 2 mRNAs

name	Rock1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:19877 MGI:107927
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC100039978 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100039978
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 9 ESTs, 4 Proteins

name	LOC635344 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:635344
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 Proteins pseudo : _no_value

name	LOC435554 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:435554
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST, 3 Proteins pseudo : _no_value

name	AK220484 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:381157 MGI:3576497
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC621832 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:621832
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 6 mRNAs, 310 ESTs, 2 Proteins

name	Esco1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:77805 MGI:1925055
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Snrpd1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:20641 MGI:98344
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC100039880 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100039880
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST

name	Abhd3 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:106861 MGI:2147183
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Mib1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:225164 MGI:2443157
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC665296 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:665296
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST, 4 Proteins pseudo : _no_value

name	1010001N08Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:68434 MGI:1915684
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 5 ESTs

name	Gata6 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:14465 MGI:107516
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Ccny (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142385651 GeneID:67974 MGI:1915224
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : cyclin Y transcript_id : NM_026484.3

name	LOC100039755 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149269624 GeneID:100039755
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 17 ESTs product : hypothetical protein LOC100039755 transcript_id : XM_001473445.1

name	Cetn1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:109148537 GeneID:26369 MGI:1347086
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : centrin 1 transcript_id : NM_007593.5

name	Colec12 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:18485493 GeneID:140792 MGI:2152907
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : collectin sub-family member 12 transcript_id : NM_130449.1

name	EG433161 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:149269632 GeneID:433161 MGI:3644023
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 22 ESTs, 1 Protein product : predicted gene, EG433161, transcript variant 1 transcript_id : XM_001473768.1

name	EG433161 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:149269631 GeneID:433161 MGI:3644023
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 14 ESTs, 4 Proteins product : predicted gene, EG433161, transcript variant 2 transcript_id : XM_484701.5

name	Thoc1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142374372 GeneID:225160 MGI:1919668
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : THO complex 1 transcript_id : NM_153552.3

name	Usp14 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:95113658 GeneID:59025 MGI:1928898
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : ubiquitin specific peptidase 14 transcript_id : NM_001038589.2

name	Usp14 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:95113661 GeneID:59025 MGI:1928898
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : ubiquitin specific peptidase 14 transcript_id : NM_021522.4

name	Rock1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:134948665 GeneID:19877 MGI:107927
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : Rho-associated coiled-coil containing protein kinase 1 transcript_id : NM_009071.2

name	LOC100039978 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149269634 GeneID:100039978
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 9 ESTs, 4 Proteins product : similar to LSM6 homolog, U6 small nuclear RNA associated transcript_id : XM_001473903.1

name	AK220484 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:134947987 GeneID:381157 MGI:3576497
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : cDNA sequence AK220484 transcript_id : NM_001083628.1

name	LOC621832 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149269637 GeneID:621832
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 6 mRNAs, 310 ESTs, 2 Proteins product : similar to nuclear transport factor 2 transcript_id : XM_001473957.1

name	Esco1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:124487020 GeneID:77805 MGI:1925055
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : establishment of cohesion 1 homolog 1 (S. cerevisiae) transcript_id : NM_001081222.1

name	Snrpd1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142388622 GeneID:20641 MGI:98344
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : small nuclear ribonucleoprotein D1 transcript_id : NM_009226.3

name	LOC100039880 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149269627 GeneID:100039880
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST product : hypothetical protein LOC100039880 transcript_id : XM_001473717.1

name	Abhd3 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:19527359 GeneID:106861 MGI:2147183
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : abhydrolase domain containing 3 transcript_id : NM_134130.1

name	Mib1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:32189427 GeneID:225164 MGI:2443157
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : mindbomb homolog 1 (Drosophila) transcript_id : NM_144860.2

name	1010001N08Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:149269629 GeneID:68434 MGI:1915684
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 5 ESTs product : RIKEN cDNA 1010001N08 gene transcript_id : XM_001473782.1

name	Gata6 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:95113656 GeneID:14465 MGI:107516
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : GATA binding protein 6 transcript_id : NM_010258.3

name	Ccny (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:31542003 CCDS:CCDS29050.1 GeneID:67974 MGI:1915224
definition	GO_process : GO:0000074 - regulation of progression through cell cycle [Evidence IEA] codon_start : 1 product : cyclin fold protein 1 protein_id : NP_080760.2

name	LOC100039755 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149269625 GeneID:100039755
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001473495.1

name	Cetn1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:76253942 GeneID:26369 MGI:1347086
definition	GO_component : GO:0005813 - centrosome [Evidence IDA] GO_function : GO:0005509 - calcium ion binding [Evidence IEA] GO_process : GO:0007049 - cell cycle [Evidence IEA]; GO:0051301 - cell division [Evidence IEA]; GO:0007067 - mitosis [Evidence IEA] codon_start : 1 note : testis-specific murine centrin product : centrin 1 protein_id : NP_031619.3

name	Colec12 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:18485494 GeneID:140792 MGI:2152907
definition	GO_component : GO:0005737 - cytoplasm [Evidence IEA]; GO:0016021 - integral to membrane [Evidence ISS]; GO:0016020 - membrane [Evidence ISS] GO_function : GO:0005534 - galactose binding [Evidence ISS]; GO:0030169 - low-density lipoprotein binding [Evidence ISS]; GO:0008329 - pattern recognition receptor activity [Evidence ISS]; GO:0004872 - receptor activity [Evidence IEA]; GO:0005044 - scavenger receptor activity [Evidence ISS]; GO:0005529 - sugar binding [Evidence ISS] GO_process : GO:0019733 - antibacterial humoral response (sensu Vertebrata) [Evidence ISS]; GO:0019734 - antifungal humoral response (sensu Vertebrata) [Evidence ISS]; GO:0009756 - carbohydrate mediated signaling [Evidence ISS]; GO:0006955 - immune response [Evidence IDA]; GO:0045087 - innate immune response [Evidence ISS]; GO:0045194 - oxidized low-density lipoprotein catabolism [Evidence ISS]; GO:0006910 - phagocytosis, recognition [Evidence ISS] [Evidence IDA]; GO:0006817 - phosphate transport [Evidence IEA]; GO:0051260 - protein homooligomerization [Evidence ISS] codon_start : 1 exception : mismatches in translation product : collectin sub-family member 12 protein_id : NP_569716.1

name	EG433161 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:51770771 GeneID:433161 MGI:3644023
definition	codon_start : 1 product : similar to developmental pluripotency associated 4 isoform 2 protein_id : XP_484701.1

name	EG433161 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:149269633 GeneID:433161 MGI:3644023
definition	codon_start : 1 product : similar to developmental pluripotency associated 4 isoform 1 protein_id : XP_001473818.1

name	Thoc1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:23956332 GeneID:225160 MGI:1919668
definition	GO_component : GO:0005634 - nucleus [Evidence IEA] GO_function : GO:0003677 - DNA binding [Evidence IEA]; GO:0005515 - protein binding [Evidence IEA]; GO:0003723 - RNA binding [Evidence IEA] GO_process : GO:0006406 - mRNA export from nucleus [Evidence IEA]; GO:0006397 - mRNA processing [Evidence IEA]; GO:0000398 - nuclear mRNA splicing, via spliceosome [Evidence IEA]; GO:0006810 - transport [Evidence IEA] codon_start : 1 product : THO complex 1 protein_id : NP_705780.1

name	Usp14 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:84452155 GeneID:59025 MGI:1928898
definition	GO_component : GO:0005625 - soluble fraction [Evidence IDA]; GO:0019717 - synaptosome [Evidence IDA] GO_function : GO:0004197 - cysteine-type endopeptidase activity [Evidence IEA]; GO:0008234 - cysteine-type peptidase activity [Evidence IEA]; GO:0016787 - hydrolase activity [Evidence IEA]; GO:0008233 - peptidase activity [Evidence IEA]; GO:0004221 - ubiquitin thiolesterase activity [Evidence IEA] GO_process : GO:0006464 - protein modification [Evidence IEA]; GO:0007268 - synaptic transmission [Evidence IMP]; GO:0006512 - ubiquitin cycle [Evidence IEA]; GO:0006511 - ubiquitin-dependent protein catabolism [Evidence IEA] codon_start : 1 note : isoform 2 is encoded by transcript variant 2; dUB-type TGT for deubiquitinating enzyme; ataxia; ubiquitin specific protease 14 product : ubiquitin specific protease 14 isoform 2 protein_id : NP_001033678.1

name	Usp14 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:31560313 GeneID:59025 MGI:1928898
definition	GO_component : GO:0005625 - soluble fraction [Evidence IDA]; GO:0019717 - synaptosome [Evidence IDA] GO_function : GO:0004197 - cysteine-type endopeptidase activity [Evidence IEA]; GO:0008234 - cysteine-type peptidase activity [Evidence IEA]; GO:0016787 - hydrolase activity [Evidence IEA]; GO:0008233 - peptidase activity [Evidence IEA]; GO:0004221 - ubiquitin thiolesterase activity [Evidence IEA] GO_process : GO:0006464 - protein modification [Evidence IEA]; GO:0007268 - synaptic transmission [Evidence IMP]; GO:0006512 - ubiquitin cycle [Evidence IEA]; GO:0006511 - ubiquitin-dependent protein catabolism [Evidence IEA] codon_start : 1 note : isoform 1 is encoded by transcript variant 1; dUB-type TGT for deubiquitinating enzyme; ataxia; ubiquitin specific protease 14 product : ubiquitin specific protease 14 isoform 1 protein_id : NP_067497.2

name	Rock1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6677759 CCDS:CCDS29053.1 GeneID:19877 MGI:107927
definition	GO_component : GO:0005856 - cytoskeleton [Evidence IEA]; GO:0005622 - intracellular [Evidence IEA] GO_function : GO:0005524 - ATP binding [Evidence IEA]; GO:0019992 - diacylglycerol binding [Evidence IEA]; GO:0016301 - kinase activity [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA]; GO:0004672 - protein kinase activity [Evidence IEA]; GO:0004674 - protein serine/threonine kinase activity [Evidence IEA]; GO:0016740 - transferase activity [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA] GO_process : GO:0006915 - apoptosis [Evidence IEA]; GO:0007242 - intracellular signaling cascade [Evidence IEA]; GO:0043524 - negative regulation of neuron apoptosis [Evidence IMP]; GO:0006468 - protein amino acid phosphorylation [Evidence IEA]; GO:0007165 - signal transduction [Evidence IEA] codon_start : 1 product : Rho-associated coiled-coil forming kinase 1 protein_id : NP_033097.1

name	LOC100039978 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149269635 GeneID:100039978
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001473953.1

name	AK220484 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:134947988 GeneID:381157 MGI:3576497
definition	GO_function : GO:0004190 - aspartic-type endopeptidase activity [Evidence IEA] GO_process : GO:0006508 - proteolysis [Evidence IEA] codon_start : 1 product : cDNA sequence AK220484 protein_id : NP_001077097.1

name	LOC621832 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149269638 GeneID:621832
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001474007.1

name	Esco1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:124487021 GeneID:77805 MGI:1925055
definition	GO_component : GO:0005634 - nucleus [Evidence IEA] GO_function : GO:0008415 - acyltransferase activity [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0016740 - transferase activity [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA] GO_process : GO:0007049 - cell cycle [Evidence IEA] codon_start : 1 note : establisment of cohesion 1 homolog 1 product : establishment of cohesion 1 homolog 1 protein_id : NP_001074691.1

name	Snrpd1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6678055 CCDS:CCDS29056.1 GeneID:20641 MGI:98344
definition	GO_component : GO:0005737 - cytoplasm [Evidence IDA]; GO:0005634 - nucleus [Evidence IDA]; GO:0030529 - ribonucleoprotein complex [Evidence IEA]; GO:0005681 - spliceosome complex [Evidence IEA] GO_process : GO:0016071 - mRNA metabolism [Evidence IEA]; GO:0000398 - nuclear mRNA splicing, via spliceosome [Evidence IEA] codon_start : 1 product : small nuclear ribonucleoprotein D1 protein_id : NP_033252.1

name	LOC100039880 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149269628 GeneID:100039880
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001473767.1

name	Abhd3 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:19527360 CCDS:CCDS29057.1 GeneID:106861 MGI:2147183
definition	GO_function : GO:0016787 - hydrolase activity [Evidence IEA]; GO:0003674 - molecular_function [Evidence IEA] GO_process : GO:0008150 - biological_process [Evidence ND] codon_start : 1 note : lung alpha/beta hydrolase 3 product : abhydrolase domain containing 3 protein_id : NP_598891.1

name	Mib1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:32189428 CCDS:CCDS29058.1 GeneID:225164 MGI:2443157
definition	GO_component : GO:0031410 - cytoplasmic vesicle [Evidence IDA]; GO:0016020 - membrane [Evidence IEA] GO_function : GO:0016874 - ligase activity [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0005515 - protein binding [Evidence IPI]; GO:0008270 - zinc ion binding [Evidence IEA] GO_process : GO:0001568 - blood vessel development [Evidence IMP]; GO:0001701 - embryonic development (sensu Mammalia) [Evidence IMP]; GO:0007507 - heart development [Evidence IMP]; GO:0001947 - heart looping [Evidence IMP]; GO:0045665 - negative regulation of neuron differentiation [Evidence IMP]; GO:0001841 - neural tube formation [Evidence IMP]; GO:0007219 - Notch signaling pathway [Evidence IMP]; GO:0045807 - positive regulation of endocytosis [Evidence IDA]; GO:0001756 - somitogenesis [Evidence IMP]; GO:0006512 - ubiquitin cycle [Evidence IEA] codon_start : 1 note : DAPK-interacting protein-1; mind bomb homolog product : ubiquitin ligase mind bomb protein_id : NP_659109.2

name	1010001N08Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:149269630 GeneID:68434 MGI:1915684
definition	codon_start : 1 product : hypothetical protein LOC68434 protein_id : XP_001473832.1

name	Gata6 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:46909571 CCDS:CCDS29059.1 GeneID:14465 MGI:107516
definition	GO_component : GO:0005634 - nucleus [Evidence IDA] GO_function : GO:0003682 - chromatin binding [Evidence IDA]; GO:0003677 - DNA binding [Evidence IDA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0005515 - protein binding [Evidence IPI]; GO:0003705 - RNA polymerase II transcription factor activity, enhancer binding [Evidence IDA]; GO:0043565 - sequence-specific DNA binding [Evidence IEA]; GO:0003700 - transcription factor activity [Evidence IDA]; GO:0016563 - transcriptional activator activity [Evidence IDA]; GO:0008270 - zinc ion binding [Evidence IEA] GO_process : GO:0001889 - liver development [Evidence IMP]; GO:0045941 - positive regulation of transcription [Evidence IEA]; GO:0045944 - positive regulation of transcription from RNA polymerase II promoter [Evidence IDA]; GO:0006355 - regulation of transcription, DNA-dependent [Evidence IDA]; GO:0006350 - transcription [Evidence IEA] codon_start : 1 note : GATA-binding protein 6 product : GATA binding protein 6 protein_id : NP_034388.2

name	LOC665184 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:665184
definition	number : 1 pseudo : _no_value

name	LOC665184 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:665184
definition	number : 2 pseudo : _no_value

name	LOC665184 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:665184
definition	number : 3 pseudo : _no_value

name	EG639618 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:639618
definition	number : 1 pseudo : _no_value

name	EG639618 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:639618
definition	number : 2 pseudo : _no_value

name	EG639618 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:639618
definition	number : 3 pseudo : _no_value

name	LOC225155 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:225155
definition	number : 1 pseudo : _no_value

name	LOC665111 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:665111
definition	number : 1 pseudo : _no_value

name	LOC100039787 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100039787
definition	number : 1 pseudo : _no_value

name	LOC100039787 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100039787
definition	number : 2 pseudo : _no_value

name	LOC635344 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:635344
definition	number : 2 pseudo : _no_value

name	LOC635344 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:635344
definition	number : 1 pseudo : _no_value

name	LOC665176 (CDS detail)
type	misc_RNA
link	vega ensembl NCBI
xref	GI:149269626 GeneID:665176
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST, 4 Proteins product : similar to CDNA sequence BC008163 pseudo : _no_value transcript_id : XR_031330.1

name	LOC435554 (CDS detail)
type	misc_RNA
link	vega ensembl NCBI
xref	GI:149269636 GeneID:435554
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST, 3 Proteins product : similar to RAE1 RNA export 1 homolog (S. pombe) pseudo : _no_value transcript_id : XR_031452.1

name	LOC665296 (CDS detail)
type	misc_RNA
link	vega ensembl NCBI
xref	GI:149269639 GeneID:665296
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST, 4 Proteins product : similar to PHD finger protein 14 pseudo : _no_value transcript_id : XR_031580.1

clone name	MSMg01-509P10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-378C04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-345P22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-479B08
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-182N10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-525F02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-103J21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-131C18
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-436H17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-332M10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-078H07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-083N22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-087F05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-155I03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-337B22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-290P12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-288P18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-116A08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-533C21
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-346B04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-486I02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-535N07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-543H14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-066D02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-085N02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-118B11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-511B02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-294G05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-539P17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-428H05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-094B19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-237L05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-532D11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-110H16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-115I08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-375G08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-397K20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-079O04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-076G17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-422L02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-167L07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-489F17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-402G11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-311L22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-520L02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-117H16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-320N18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-450M18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-413G05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-433I05
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-416J12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-157A09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-168K11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-509F21
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-290A11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-534N20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-288D15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-237F09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-072B05
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-517H01
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-427I19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-345G21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-436I15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-111I04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-381H15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-547P02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-423J17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-484H03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-176E11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-474G11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-211B24
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-322I07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-233L14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-181E03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-546K09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-117O04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-117O06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-405O12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-165L16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-498K17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-217K12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-332K12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-463M06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-316I19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-329A10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-184N20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-196O06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-052B07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-423N14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-295F22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-423N14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-476F15
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-260E07
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-206D18
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-216J06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-315H06
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-263E19
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-175G20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-038H14
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-019P05
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-331N06
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-093C13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-222B12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-239P10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-201G04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-004F08
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-174L23
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-228E02
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-044N21
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-122F22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-335P04
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-215L11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-224K01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-264I12
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-082A22
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-247M16
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-184D20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-009E10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-148G21
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-231C14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-226M16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-062M23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-313G06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-331H14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-113E08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-279J20
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-144E15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-259F15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-211B22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-325B18
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-122P02
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-273H19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-335P12
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-113N08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-084L14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-033J16
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-171C09
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-108B19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-164K03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-342O12
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-267L21
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-348E20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-221O06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-237F03
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-002J12
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-316B03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-001P13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-096I16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-218D15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-032M19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-171O05
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-034G09
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-085G24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-218F17
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-192G07
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-066I09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-174N15
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-208P18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-024B23
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-060B18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-180D14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-293G12
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-220L23
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-126H17
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-347A11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-112E14
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-136F23
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-169D13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-270F20
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-041K21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-159J16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-116J04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-134M15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-137J05
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-318H02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-266F19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-010E19
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-196N18
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-155C01
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-273H09
singlet/doublet	doublet
plural/unique	unique

BAC End Information

BAC end	BAC-end 1	BAC-end 2
end name	MSMg01-489F17.T7 (MSMg01no489_f17.b1)	MSMg01-489F17.TJ (MSMg01no489_f17.g1)
ACC	AG567859	AG567860
length	785	772
length of high quality (start - end)	569 (49 - 617)	590 (74 - 663)
definition	CHROMAT_FILE: MSMg01no489_f17.b1 PHD_FILE: MSMg01no489_f17.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:12:33 2005	CHROMAT_FILE: MSMg01no489_f17.g1 PHD_FILE: MSMg01no489_f17.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:12:34 2005
singlet/doublet	singlet	---
BLAST hit	unique	no hit data
sequence	NNCCCCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG CGGAATTCAACAGGCTAGGAACATATGTCAGGAACAACTGGATATGGGCT GGGTTTTTTGTTTTTTTTTTTCTTATCAAGCTGTCATGGGCTGTAAATAC ATGGACATCAGATTGGTATATCTCTCCTCAGTTCAGAGCTACTAAGAATA CTGGCAGAGGTTTGGGAGCTGTGTATTCAAAAGATCTGTAATTAGTGACA TGATCCAACCACCTAAACTGAGACATGGGTGAGAGGACTTGCCTGTTCAG TTATATGCTATGGGGTGCTAAGATTTAAAGAGAATTAAGGCAAGGCCCAA GCCCTCAATATGGGCAAAAATCCCTCAACATGAATTACTAATGATGGGAC AATAATTACTTTTTTCTTGTTTTATCCCAAATGGCTTCATCTCTTCTGGG CCCAGTAATGTGATTGACAATTACACAAGACCTTGGAGTGTCCTATAAAC AGACAATTAGAACAAAGGTATACATTGGCCTAGCTTTGTACTTGCCTTAA ACATTATACCATGCCTTAGCCACAGCAGCTACTCAATAAACAAATATCAT TGGAATACTGAATAAGGTAAAAGGTTCTGTACATCTCACTAGATAGGACC CCGAAAAGTAACAAGGCTTTCTTTCATTTTGTGGGACACACAGACCCCAT CAGGGTATATATATATGAAGCACTTAGGGAAAAGTCATAATCAGAAACAA TAGTGCATCAACGGATCCACAAAAACTAATGGCCN	CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXTGTATTGAAACTGGGATGGGTCTAAGC CTTGCTGCTGTTGAATAATATTCCATTTGCAGGAATAATGGTGTGCTGTG CTGCTAAGACATTTTTATTTATCTGTTTTCTAGCATCAAAATCTTGCATC TGGGCAGAGAAGATGGTTCAGTCAGTAGGGTGCTTACAGGTTTGATCCCT AGTACCCACAAAACCATCGGGCATAATGATGTGACTGAATCCCAGTACTG GGAAGACAAAGAGAGTATTATCCCTGGGGCTTGCTTGCCAGCCCACCTAG CCCAGTTAATAAATTTCATTGTCAGTGAGAGACTATCTCAAAAGAAAAAC AAAAACAAACAAACAACAAACAAACATGGAAAGCTAATGAGAAAGACTCA GCATCAACCTCTGACTTCGACATGTAGCACCTACAAGTTCACACACATGT GCATACACACATGAACATGTACATACACAAACAAATCTCAGTTCTATTTT TAAATTGCTTTATTTAACTTTATTATTAAAATATAATTTCCATCAATGAA GTTTCTACTCTCTTTTAAATTATTTTTACATTTATATTTGTGTGTGTGTG TGTGTGTGTGTGNNNNATGNNNNTGNNNNNNNNNNNNNNNNNTTTTTTTN TNTTTNNTTTTTTTTTNTTNTTTTTNTTTTTTTTTTNTNNTTNTNTTTTT TTTTTTTTTTTTTTTTTTTTTN
quality values	Open. Hide. 0 0 3 6 6 6 8 8 10 12 10 10 21 19 19 19 11 12 12 23 19 29 30 25 29 29 37 43 28 28 31 25 25 13 23 11 11 11 11 11 11 20 20 25 25 30 30 31 31 59 59 57 36 36 36 29 31 31 31 31 21 21 11 11 11 11 15 15 19 28 30 33 50 33 33 53 36 38 38 42 42 53 53 53 50 57 57 47 57 47 47 47 47 47 51 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 57 68 68 68 68 68 68 68 57 57 57 57 57 50 50 57 50 50 50 50 50 50 50 57 57 57 57 57 57 68 68 57 68 68 68 68 68 68 68 59 68 68 68 68 59 59 59 59 59 59 59 68 68 68 59 57 57 57 57 57 57 68 68 57 57 57 59 57 57 57 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 57 57 57 57 57 57 57 68 57 57 57 57 57 57 62 62 68 68 68 68 68 68 68 68 68 68 68 62 62 62 62 62 62 62 52 62 62 62 62 62 62 62 68 68 62 62 62 62 62 62 62 62 62 68 68 62 62 62 68 68 68 62 68 68 62 62 62 62 62 62 62 62 62 62 62 62 62 68 68 68 68 68 68 68 68 68 68 68 62 62 62 62 62 62 62 62 62 43 43 62 62 62 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 62 62 59 57 52 57 52 57 57 57 57 59 57 52 52 57 59 59 59 59 59 59 68 68 68 68 57 57 57 57 57 57 57 52 52 52 57 57 57 57 57 57 57 57 57 57 57 57 59 57 52 52 52 57 57 57 57 54 54 54 57 59 68 68 59 59 57 57 57 59 59 59 59 52 43 43 35 35 35 59 59 57 57 57 57 43 43 43 50 50 57 43 43 43 57 43 43 43 47 47 48 48 48 48 44 59 59 54 54 54 47 47 48 57 59 44 44 39 37 37 44 44 57 57 48 48 48 46 59 43 43 39 43 43 43 39 42 32 36 32 43 43 43 43 43 39 42 35 35 35 39 37 37 32 32 32 37 30 35 30 37 30 30 28 32 32 20 20 32 32 33 36 36 32 30 18 20 20 32 32 35 35 35 32 29 19 18 15 22 14 15 15 32 32 37 30 30 30 37 34 34 28 24 24 33 34 37 37 30 30 30 37 37 37 37 34 31 24 28 28 28 24 25 25 25 12 12 12 13 15 20 28 28 47 47 37 37 33 32 32 31 20 18 19 32 34 39 36 32 24 27 24 28 28 28 23 23 22 25 24 24 25 22 24 28 34 34 36 29 25 24 19 14 14 11 11 10 16 19 11 16 11 12 12 21 21 23 21 24 19 19 12 19 19 8 6 6 6 6 8 10 10 12 21 19 28 22 16 23 8 8 8 9 8 8 10 10 10 13 18 19 17 21 15 15 12 21 13 17 17 18 12 11 11 12 14 18 11 10 9 9 9 9 12 11 13 11 11 11 12 12 13 21 16 21 10 10 9 8 8 8 10 8 8 8 10 10 11 13 12 12 11 11 9 8 8 8 8 8 9 11 9 8 8 8 11 8 8 8 8 8 10 9 9 8 8 8 8 12 11 11 11 12 9 8 8 8 8 6 10 9 9 9 9 9 9 9 9 8 8 7 7 7 8 8 9 9 12 12 12 19 23 14 17 10 11 10 8 8 6 6 3 0	Open. Hide. 8 8 8 8 12 11 9 9 27 21 19 10 10 10 16 28 39 39 47 47 50 50 50 50 50 47 47 27 27 9 6 6 6 6 7 3 0 3 10 19 21 34 28 28 37 37 33 36 36 33 33 33 50 42 39 27 15 11 6 6 6 7 11 12 12 12 18 13 17 24 28 28 28 41 47 47 53 53 53 53 57 57 59 59 59 57 47 47 47 47 47 47 57 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 57 57 57 57 47 57 57 57 57 57 68 68 68 68 68 68 68 68 68 68 68 50 51 51 51 51 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 51 51 50 50 50 51 57 57 57 57 57 57 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 48 57 47 47 47 41 44 44 44 68 57 57 57 57 57 57 57 68 57 57 57 57 57 59 59 59 59 59 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 59 59 59 59 59 59 48 59 59 59 59 59 57 59 57 57 53 50 50 50 50 47 41 28 20 12 11 12 11 11 11 14 15 19 29 30 47 59 59 59 59 59 59 59 59 59 59 59 59 57 57 57 57 57 57 57 57 57 57 57 68 68 68 68 68 68 68 59 59 59 59 59 68 68 68 68 68 68 68 68 68 57 57 59 68 68 68 68 68 68 68 68 68 68 68 68 57 68 59 59 59 57 48 59 59 68 68 68 68 57 57 57 57 57 57 57 57 68 68 68 68 68 68 68 57 57 57 57 57 57 57 68 68 68 68 68 68 59 59 57 57 57 57 57 68 57 57 57 57 59 59 59 68 68 68 68 57 57 57 57 57 57 35 57 59 59 59 59 59 57 57 57 68 68 57 57 57 57 57 57 37 37 57 57 57 57 57 57 52 59 59 57 57 57 57 57 57 57 57 57 57 52 57 57 59 59 59 59 59 59 59 59 57 57 57 57 57 59 57 59 57 57 54 54 54 59 57 68 68 59 59 57 57 57 59 59 59 59 57 57 37 37 37 57 57 57 57 59 59 59 59 47 43 39 59 59 59 59 57 57 57 54 54 68 54 54 54 48 48 48 48 48 59 59 59 57 54 54 54 54 47 54 54 57 48 48 48 40 40 40 44 43 59 35 35 35 39 39 47 47 48 47 47 39 32 32 30 30 30 37 34 32 28 35 35 32 36 28 39 39 37 37 30 30 30 32 32 39 39 48 48 48 43 43 43 43 43 59 59 43 42 30 28 28 42 43 48 48 48 57 43 57 57 57 59 59 59 59 59 59 59 59 57 59 48 48 48 50 33 33 41 37 23 23 3 0 0 0 0 3 11 3 0 0 0 0 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 17 19 23 19 15 3 0 3 0 3 8 3 0 0 3 8 10 10 11 12 12 10 3 0 3 3 0 3 7 7 7 3 0 3 6 7 7 11 8 8 8 8 3 0 3 0 0 3 3 0 3 0 3 10 8 9 8 8 11 13 17 8 8 8 8 11 13 8 8 6 6 6 6 11 10 6 6 3 0

Alignment Information

BAC End 1

BAC End 2

Query= MSMg01no489_f17.b1 MSMg01no489_f17.b1 CHROMAT_FILE:
MSMg01no489_f17.b1 PHD_FILE: MSMg01no489_f17.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:12:33 2005
         (569 letters)



>mm_chr18_10393649_10394616
          Length = 968

 Score = 1069 bits (553), Expect = 0.0
 Identities = 562/565 (99%), Gaps = 1/565 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcaacaggctaggaacatatgtcaggaacaactggatatgggctgggttttttgtt 64
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 768 gaattcaacaggctaggaacatatgtcaggaacaactggatatgggctgggttttttg-t 710

                                                                       
Query: 65  tttttttttcttatcaagctgtcatgggctgtaaatacatggacatcagattggtatatc 124
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 709 ttttgttttcttatcaagctgtcatgggctgtaaatacatggacatcagattggtatatc 650

                                                                       
Query: 125 tctcctcagttcagagctactaagaatactggcagaggtttgggagctgtgtattcaaaa 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 649 tctcctcagttcagagctactaagaatactggcagaggtttgggagctgtgtattcaaaa 590

                                                                       
Query: 185 gatctgtaattagtgacatgatccaaccacctaaactgagacatgggtgagaggacttgc 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 589 gatctgtaattagtgacatgatccaaccacctaaactgagacatgggtgagaggacttgc 530

                                                                       
Query: 245 ctgttcagttatatgctatggggtgctaagatttaaagagaattaaggcaaggcccaagc 304
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 529 ctgttcagttaaatgctatggggtgctaagatttaaagagaattaaggcaaggcccaagc 470

                                                                       
Query: 305 cctcaatatgggcaaaaatccctcaacatgaattactaatgatgggacaataattacttt 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 469 cctcaatatgggcaaaaatccctcaacatgaattactaatgatgggacaataattacttt 410

                                                                       
Query: 365 tttcttgttttatcccaaatggcttcatctcttctgggcccagtaatgtgattgacaatt 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 409 tttcttgttttatcccaaatggcttcatctcttctgggcccagtaatgtgattgacaatt 350

                                                                       
Query: 425 acacaagaccttggagtgtcctataaacagacaattagaacaaaggtatacattggccta 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 349 acacaagaccttggagtgtcctataaacagacaattagaacaaaggtatacattggccta 290

                                                                       
Query: 485 gctttgtacttgccttaaacattataccatgccttagccacagcagctactcaataaaca 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 289 gctttgtacttgccttaaacattataccatgccttagccacagcagctactcaataaaca 230

                                    
Query: 545 aatatcattggaatactgaataagg 569
           |||||||||||||||||||||||||
Sbjct: 229 aatatcattggaatactgaataagg 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 569
Length of database: 968
Length adjustment: 10
Effective length of query: 559
Effective length of database: 958
Effective search space:   535522
Effective search space used:   535522
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

BAC Information

Search Parameter

Search Result

BAC

BAC End Information

Alignment Information