Query= MSMg01no489_g02.b1 MSMg01no489_g02.b1 CHROMAT_FILE:
MSMg01no489_g02.b1 PHD_FILE: MSMg01no489_g02.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:12:35 2005
(667 letters)
>mm_chr18_82927964_82929030
Length = 1067
Score = 1241 bits (642), Expect = 0.0
Identities = 659/666 (98%), Gaps = 4/666 (0%)
Strand = Plus / Plus
Query: 4 ggaattccttggttcca--ccagatcgctaaaggatcttaccggaagtgtcttttcatgc 61
|||||||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattccttgga--cagaccagatcgctaaaggatcttaccggaagtgtcttttcatgc 261
Query: 62 tagttccggtgtctcacacggacgggcacagcttgtgtgggttctgcctggaaagtgcct 121
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 tagttccggtggctcacacggacgggcacagcttgtgtgggttctgcctggaaagtgcct 321
Query: 122 gactgcccaagtcagcggctccgtgccagggatgagcagcaggcttgatttcaaggtctc 181
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 gactgcccaagtcagcggctccgtgccagggatgagcagcaggcttgatttcaaggtctc 381
Query: 182 aggtgaggaccgtccatttgaactgatcagctttgcgtgttccccagggtggctttccac 241
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 aggtgaggaccgtccatttgaactgatcagctttgcgtgttccccagggtggctttccac 441
Query: 242 actgagctgcagtctccccgcaagagcaagcagaccggccacatgcactgcccactcctt 301
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 gctgagctgcagtctccccgcaagagcaagcagaccggccacatgcactgcccactcctt 501
Query: 302 ccctcacgccacattccattacccacgtgccaaatccacttatatttgcctaaagcctca 361
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 ccctcacgccacattccattacccacgtgccaaatccacttatatttgcctaaagcctca 561
Query: 362 ggtgtctagataatagaagttgtactgagccggtcctgggcaccacacaaggttgtcctc 421
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 562 ggtgtctagataatagaagttgtactgagccggtcctgggcaccacacaaggttgtcctc 621
Query: 422 accttggactggcttgggtcactgaatcctgataaaccaacaccctgaagcccctcacct 481
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 622 accttggactggcttgggtcactgaatcctgataaaccaacaccctgaagcccctcacct 681
Query: 482 catccccacagacagacaggctcctgtggagatacggaaacgtgccctgtgttagttaga 541
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 682 catccccacagacagacaggctcctgtggagatacggaaacgtgccctgtgttagttaga 741
Query: 542 cttctttattttacttactgcctggcatttacatgacctggacggagatggggaattaca 601
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 742 cttctttattttacttactgcctggcatttacatgacctggacggagatggggaattaca 801
Query: 602 gatgtgctgaaaggaaaaagaagaaagcccttaacaatgccctctgtagctttggaacat 661
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 802 gatgtgctgaaaggaaaaagaagaaagcccttaacaatgccctctgtagctttggaacat 861
Query: 662 gaagaa 667
||||||
Sbjct: 862 gaagaa 867
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 667
Length of database: 1067
Length adjustment: 10
Effective length of query: 657
Effective length of database: 1057
Effective search space: 694449
Effective search space used: 694449
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no489_g02.g1 MSMg01no489_g02.g1 CHROMAT_FILE:
MSMg01no489_g02.g1 PHD_FILE: MSMg01no489_g02.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:12:35 2005
(593 letters)
>mm_chr18_83067710_83068696
Length = 987
Score = 984 bits (509), Expect = 0.0
Identities = 573/601 (95%), Gaps = 16/601 (2%)
Strand = Plus / Minus
Query: 1 cagtttccagaatcgtgaaaaaaataacagcgtgccgttcagaaatccccccagctggta 60
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 709 cagtttccagaatcgtg-aaaaaataacagcgtgccgttcagaaatccccccagctggta 651
Query: 61 ggaatttgtttgagcagcctggagagaccaaggaagcctacaacccaaagcagctgccac 120
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 650 ggaatttgtttgagcagcctggagagaccaaggaagcccacaacccaaagcagctgccac 591
Query: 121 tgcaggcagtgtaccttaactcagaactgtccgttggtcccagggagggagcaaacagta 180
|||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 590 tgcaggcagtgtacattaactcagaactgtccgttggtcccagggaggaagcaaacagta 531
Query: 181 ctgagcactcattcagc----c---a-gggactgcactggtctgtggctgggactcctat 232
|||||||||||| ||| | | |||||||||||||||||| ||||||||||||||
Sbjct: 530 ttgagcactcatttagctcgtctggaggggactgcactggtctgtagctgggactcctat 471
Query: 233 ccttccatttctaggcctgccgttagggacacctgaacttaaaaatgcccatgcaaagca 292
|||||| ||||||||| |||| |||||||||| ||||||||||||||||||||||
Sbjct: 470 ccttcc------aggcctgccattagagacacctgaatttaaaaatgcccatgcaaagca 417
Query: 293 cagtaggaatactgtgggttagggttacaattgctgtggcgaaacacgcaagggcggagg 352
||||||||||||||||||||||||||||||||||||||| ||||||||| |||| |||||
Sbjct: 416 cagtaggaatactgtgggttagggttacaattgctgtggtgaaacacgccaggg-ggagg 358
Query: 353 agagggttaacttggcttctacttccatatctgtttatcatcaaagggagtcaggacagg 412
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 357 agagggttaacttggcttctacttccatatctgtttatcatcaaagggagtcaggacagg 298
Query: 413 aactcaaacagggcaggaacctggaggcaggagttgatgcaaagaccatggaagagtgtt 472
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 297 aactcaaacagggcaggaacctggaggcaggagttgatgcaaagaccatggaagagtgtt 238
Query: 473 gtttaccggcctgctccatgtgacttgctcagactgctttttaattattattattttata 532
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 237 gtttaccggcctgctccatgtgacttgctcagactgctttttaattattattattttata 178
Query: 533 gaatgcaggactaccggcccatgtatgggaccacccacaatgggctgggccctccccatc 592
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 177 gaacgcaggactaccggcccatgtatgggaccacccacaatgggctgggccctccccatc 118
Query: 593 a 593
|
Sbjct: 117 a 117
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 4
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 593
Length of database: 987
Length adjustment: 10
Effective length of query: 583
Effective length of database: 977
Effective search space: 569591
Effective search space used: 569591
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
