BAC Information

Click to search

BAC

Clone NameMSMg01-490C09
Chromosome18 (Build37)
Map Location 66,532,583 - 66,533,254
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC667816, Malt1, LOC638570, LOC100042820, Zfp532, 5330437I02Rik, Sec11c, Grp, Rax, Cplx4, Lman1, Ccbe1
Downstream genePmaip1, LOC100042852, Mc4r, Gnal, Chmp1b, Mppe1, Impa2, B430212C06Rik, Cidea
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-490C09.T7 (MSMg01no490_c09.b1)MSMg01-490C09.TJ (MSMg01no490_c09.g1)
ACCAG568456AG568457
length747755
length of high quality
(start - end)
646 (71 - 716)673 (83 - 755)
definitionCHROMAT_FILE: MSMg01no490_c09.b1 PHD_FILE: MSMg01no490_c09.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:13:39 2005CHROMAT_FILE: MSMg01no490_c09.g1 PHD_FILE: MSMg01no490_c09.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:13:39 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NAGCTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAAGAGGATCCG
CGGAATTCTGTCATTGCTGGGCTTTGAAGTCTCAAAAGCCCATGCCTGGC
CCAGTCTCTCTCTGTGTCTCTCTCTGTGTCTCGATCTCTCTGTCTCCCAG
TCTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATTTCTGTC
TGTCTGTCTCTGTGTGTGTCTTTCTGTCTCTGTCTCTCTGTGTGTCTCTC
TGTGTGTCTTTCTGTCTGTCTGTCTCTATCTTTGTCTGTCTCTCTGTCTC
TCTCTGTCTCTCCCTCTCTTTTTTTGAATCAGGATGTAGGTTTTAGCTAC
TTCTCCACCAACACATCTCCATATCTCCATGTTCCCCACCATGATGACAC
TATAAGTAACCTCTGAAACTGTAAGCAAGCCCCCAATTAAATCATTTCCT
TTATAAGGGTCACTTTGGTCATGATGTCTTTTCACAAGCAGCAGAGCAAA
GGATAAATAAAGACATTAGGTACCATTCAAAGCACAACACAGCCAGGAGT
GGTGATATACACCAGTAACTCCAGTATTTGGAGGCTAAAGCAGGAGAATC
CCAGGGAGTTCACAGCTAGCCTAGACTATACAGTGAGACCCTGTCTCCAA
AATAAATAAATAAATAACAACATAGGGTATTGACTTCGTGAATATTGGAA
TCTATCAATAATCTGTTTGTTAAAGGGATATTTAACCTAATACTATT
AGGGACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGTGTATAAATCTTCAGA
CAGGACAGACCTCGGGGATCTGCCTCAGCTCTCTAGAAGGAACCACAAGG
CAACCAAACGCTCAGGTTCAAGGAAGATCGCGCAACTCAGGAGGCTAACA
CAGCTGCCCCGAGACCCTCTTTGTGAGGCACAAGCTCTAGAGCTCAACAA
ATCATTTTGCTGCCTCTGTGGCTGAGGAAAAGGAGTCTCACAAAGCAAAG
AGGACTCAGATGTTTCCAGTTGGAGATCAAAAGGCAGCTGAGTGCCTAGG
AGGGGAGAAGTGTGAGATCATTCATAAATCCGAATTTATTGCTCTCAGAC
TGGAAGTCAAAAGGCGCTCGCGCAAATATATGGGATCCTAAGGCTATTCC
AGCAGCCACAGCTTTGAGATTCTGGGCCACACTGGGTGTGGGCTCAGTGA
TGTCTGCCTTCTCCCCCAAGCCTTGGAGACTTGATTCATTAACTGAGTTT
AGATTCCATATTTGGGGCTTTTTAACATTTATTCAGTATTTATCTATCTA
TGTATCTATCTACATTAGTGTATGGATGGATGTGCATGTACCACAATGTG
TCTGATCTGGAGTTGGTTCTCTCCTTCCACTTTGTGGGACCTGGGGAGTG
AACTCGGGTTGTAAGGCTTGATGGCAAGTGCCCACAGGGACATCTTGGAT
GCCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no490_c09.g1 MSMg01no490_c09.g1 CHROMAT_FILE:
MSMg01no490_c09.g1 PHD_FILE: MSMg01no490_c09.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:13:39 2005
         (673 letters)



>mm_chr18_66532383_66533454
          Length = 1072

 Score = 1263 bits (653), Expect = 0.0
 Identities = 668/673 (99%), Gaps = 1/673 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   agtgtataaatcttcagacaggacagacctcggggatctgcctcagctctctagaaggaa 60
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agtgtataaatcttcaggcaggacagacctcggggatctgcctcagctctctagaaggaa 260

                                                                       
Query: 61  ccacaaggcaaccaaacgctcaggttcaaggaagatcgcgcaactcaggaggctaacaca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ccacaaggcaaccaaacgctcaggttcaaggaagatcgcgcaactcaggaggctaacaca 320

                                                                       
Query: 121 gctgccccgagaccctctttgtgaggcacaagctctagagctcaacaaatcattttgctg 180
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gctgccc-gagaccctctttgtgaggcacaagctctagagctcaacaaatcattttgctg 379

                                                                       
Query: 181 cctctgtggctgaggaaaaggagtctcacaaagcaaagaggactcagatgtttccagttg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 cctctgtggctgaggaaaaggagtctcacaaagcaaagaggactcagatgtttccagttg 439

                                                                       
Query: 241 gagatcaaaaggcagctgagtgcctaggaggggagaagtgtgagatcattcataaatccg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 gagatcaaaaggcagctgagtgcctaggaggggagaagtgtgagatcattcataaatccg 499

                                                                       
Query: 301 aatttattgctctcagactggaagtcaaaaggcgctcgcgcaaatatatgggatcctaag 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 500 aatttattgctctcagactggaagtcaaaaggcgctcgcgcaaatatatgggatcctgag 559

                                                                       
Query: 361 gctattccagcagccacagctttgagattctgggccacactgggtgtgggctcagtgatg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 gctattccagcagccacagctttgagattctgggccacactgggtgtgggctcagtgatg 619

                                                                       
Query: 421 tctgccttctcccccaagccttggagacttgattcattaactgagtttagattccatatt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 tctgccttctcccccaagccttggagacttgattcattaactgagtttagattccatatt 679

                                                                       
Query: 481 tggggctttttaacatttattcagtatttatctatctatgtatctatctacattagtgta 540
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 tggggttttttaacatttattcagtatttatctatctatgtatctatctacattagtgta 739

                                                                       
Query: 541 tggatggatgtgcatgtaccacaatgtgtctgatctggagttggttctctccttccactt 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 740 tggatggatgtgcatgtaccacaatgtgtctgatctggagttggttctctccttccactt 799

                                                                       
Query: 601 tgtgggacctggggagtgaactcgggttgtaaggcttgatggcaagtgcccacagggaca 660
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 800 tgtgggacctggggagtgaactcgggttgtaaggcttgatggcaagtgcccacagggcca 859

                        
Query: 661 tcttggatgcccc 673
           |||||||||||||
Sbjct: 860 tcttggatgcccc 872


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 673
Length of database: 1072
Length adjustment: 10
Effective length of query: 663
Effective length of database: 1062
Effective search space:   704106
Effective search space used:   704106
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)