BAC Information

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BAC

Clone NameMSMg01-490E10
Chromosome18 (Build37)
Map Location 57,744,779 - 57,863,877
singlet/doubletdoublet
Overlap gene1700011I03Rik, 2210409D07Rik
Upstream geneRnuxa, 1700065I17Rik, LOC675171, Lmnb1, March3, C330018D20Rik, Megf10, LOC672445, Prrc1, 4930511M06Rik
Downstream geneSlc12a2, 9330166H04Rik, Fbn2, Slc27a6, Isoc1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-490E10.T7 (MSMg01no490_e10.b1)MSMg01-490E10.TJ (MSMg01no490_e10.g1)
ACCAG568554AG568555
length747761
length of high quality
(start - end)
653 (74 - 726)634 (85 - 718)
definitionCHROMAT_FILE: MSMg01no490_e10.b1 PHD_FILE: MSMg01no490_e10.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:13:49 2005CHROMAT_FILE: MSMg01no490_e10.g1 PHD_FILE: MSMg01no490_e10.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:13:49 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(57,744,779 - 57,745,431)(57,863,371 - 57,863,877)
sequence
AAGGGATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCTCACTTTGCCATGGGAGGGAAAGGTAAACATGGTGTTTA
AAATGGAGGAAAGATGATTCTGGCTGAACTGGGTTCACAGCCTGTTGTGA
GGAGTGGAAAACATGTCAGCAATGAAACTGGATATTTGGCTGAAAAGAGT
TCTAAGTGTTGAAGAGGCAGATAAGCAAGAGATAAGCAAAGAAAAATAAG
TTCTCAGCTTATTTACATTGCAGAGAATGCCAAGGGCGTTGACACGCAAC
TGTCCTCTAAGGAGATAGTTCTGAGTGTGAACCACAGACCTCCTCAGCAC
CCTCAACAAGAACAGCAAAAATTTCAGTTACAAGTGATGGAGACGGCATG
GAAGGAAGAGGAGGGTCTCTGATTTCTTAGATCTCACAGGACAGACAGTT
AAACTATGCACCTATAAATATGTTATCCTTAGCCACAATGAGCCAAACAA
GCCATGATGCTGCGGTCACCTGAAACTAAGGGGTAGAATTCTGGCCCCTT
AGTGGCAGAGGCCTGGAGATGAGACTTCTATGCAGCATAGAAGTCAGGGT
GTGAGTCACACTGTGCACAGCTGCAAAAGATCAAGCGCTGCCCCACAGAA
CCATAGCATGTCATCAAAGAGTGATTGTCGTACCTTGCAGGCTTGTGGAT
TCCTCTCTCCTTCCTTCTTTTTCCTTTGGGGAATGGGAATGCTTATN
NAAAACCCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTGGTAATTTACTGAG
GAAACCAGTATAAAGAACTGCCAATCATCCCGAGAATGAGTGAGGTGGCC
AAAAGCTCCCACAGACTGAACAGTGATTCAATTTAACAGAGAATTTTCTA
GTCCCTCTTCATAGATCTTCCATGTGACACGGCTATACCACTCCTGGGTA
TTTACCCAAGGGACTTCAAGTTAAAACCACACAATGGAATTTGCACATTA
ATGTTACTGTAGCATTATTCACAACAGCTAATTTATAGAAGTAATCTGGA
TGTCCAACTACAGAGGGATGGCTAAAGAAAACATGGCATATATACACAAT
GGGATTTATTTCGGCGACAAAGAACGAGGATGAATCAGTGAGATGAATGA
GCAAGTGAAATCTACAGCTTCCAAGCCCCAAGCCCTACATCCAATCCCTA
GGCTGCACAGCTTTCCCTGTGACCTCCACACGTGGGACGTGGCACATGCC
ACCCTCAACCCACACATGCACACAAAATAAAAAGGAGACGTCTTGAGAAG
AATAAAGTGTCCTGTGCAGGAAAATAGAAGGAACTGGAGGTAACTTGGCC
CTTATGTCTCACTCAGTCTCTGCCACGATGCTTCCCACCATGGCATTAAT
GGACTGAACCTCTGAACTGTNAGCCAGCCCTAATTAAATATTTTCCTTTC
TAAAGAGTGCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no490_e10.b1 MSMg01no490_e10.b1 CHROMAT_FILE:
MSMg01no490_e10.b1 PHD_FILE: MSMg01no490_e10.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:13:49 2005
         (653 letters)



>mm_chr18_57744579_57745631
          Length = 1053

 Score = 1224 bits (633), Expect = 0.0
 Identities = 648/653 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   gggagggaaaggtaaacatggtgtttaaaatggaggaaagatgattctggctgaactggg 60
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 201 gggagggaaaggtaaacatggtgtttaaaatggaggaaagatgatcctggctgaactggg 260

                                                                       
Query: 61  ttcacagcctgttgtgaggagtggaaaacatgtcagcaatgaaactggatatttggctga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttcacagcctgttgtgaggagtggaaaacatgtcagcaatgaaactggatatttggctga 320

                                                                       
Query: 121 aaagagttctaagtgttgaagaggcagataagcaagagataagcaaagaaaaataagttc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aaagagttctaagtgttgaagaggcagataagcaagagataagcaaagaaaaataagttc 380

                                                                       
Query: 181 tcagcttatttacattgcagagaatgccaagggcgttgacacgcaactgtcctctaagga 240
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tcagcttatttatattgcagagaatgccaagggcgttgacacgcaactgtcctctaagga 440

                                                                       
Query: 241 gatagttctgagtgtgaaccacagacctcctcagcaccctcaacaagaacagcaaaaatt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gatagttctgagtgtgaaccacagacctcctcagcaccctcaacaagaacagcaaaaatt 500

                                                                       
Query: 301 tcagttacaagtgatggagacggcatggaaggaagaggagggtctctgatttcttagatc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tcagttacaagtgatggagacggcatggaaggaagaggagggtctctgatttcttagatc 560

                                                                       
Query: 361 tcacaggacagacagttaaactatgcacctataaatatgttatccttagccacaatgagc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tcacaggacagacagttaaactatgcacctataaatatgttatccttagccacaatgagc 620

                                                                       
Query: 421 caaacaagccatgatgctgcggtcacctgaaactaaggggtagaattctggccccttagt 480
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||
Sbjct: 621 caaacaagccatgatgctgcggtcacctgaaactaaggggcagaattctggcccctttgt 680

                                                                       
Query: 481 ggcagaggcctggagatgagacttctatgcagcatagaagtcagggtgtgagtcacactg 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ggcagaggcctggagatgagacttctatgcagcatagaagtcagggtgtgagtcacactg 740

                                                                       
Query: 541 tgcacagctgcaaaagatcaagcgctgccccacagaaccatagcatgtcatcaaagagtg 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 tgcacagctgcaaaagatcaagcgctgccccacagaaccatagcatgtcatcaaagagtg 800

                                                                
Query: 601 attgtcgtaccttgcaggcttgtggattcctctctccttccttctttttcctt 653
           |||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 attgtcataccttgcaggcttgtggattcctctctccttccttctttttcctt 853


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 653
Length of database: 1053
Length adjustment: 10
Effective length of query: 643
Effective length of database: 1043
Effective search space:   670649
Effective search space used:   670649
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no490_e10.g1 MSMg01no490_e10.g1 CHROMAT_FILE:
MSMg01no490_e10.g1 PHD_FILE: MSMg01no490_e10.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:13:49 2005
         (634 letters)



>mm_chr18_57862844_57863877
          Length = 1034

 Score =  934 bits (483), Expect = 0.0
 Identities = 501/507 (98%)
 Strand = Plus / Minus

                                                                        
Query: 128  tagatcttccatgtgacacggctataccactcctgggtatttacccaagggacttcaagt 187
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1034 tagatcttccatgtgacacggctataccactcctgggtatttacccaagggacttcaagt 975

                                                                        
Query: 188  taaaaccacacaatggaatttgcacattaatgttactgtagcattattcacaacagctaa 247
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 974  taaaaccacacaatggaatttgcacattaatgttactgtagcattattcacaacagctaa 915

                                                                        
Query: 248  tttatagaagtaatctggatgtccaactacagagggatggctaaagaaaacatggcatat 307
             |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 914  attatagaagtaatctggatgtccaactacagagggatggctaaagaaaacatggcatat 855

                                                                        
Query: 308  atacacaatgggatttatttcggcgacaaagaacgaggatgaatcagtgagatgaatgag 367
            |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 854  atacacaatgggatttatttcggcgacaaagaacgaggttgaatcagtgagatgaatgag 795

                                                                        
Query: 368  caagtgaaatctacagcttccaagccccaagccctacatccaatccctaggctgcacagc 427
            | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 794  cgagtgaaatctacagcttccaagccccaagccctacatccaatccctaggctgcacagc 735

                                                                        
Query: 428  tttccctgtgacctccacacgtgggacgtggcacatgccaccctcaacccacacatgcac 487
            |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 734  tttccctgtgacctccacacgtgggacgtggcgcatgccaccctcaacccacacatgcac 675

                                                                        
Query: 488  acaaaataaaaaggagacgtcttgagaagaataaagtgtcctgtgcaggaaaatagaagg 547
            ||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 674  acaaaataaaaaggagatgtcttgagaagaatagagtgtcctgtgcaggaaaatagaagg 615

                                                                        
Query: 548  aactggaggtaacttggcccttatgtctcactcagtctctgccacgatgcttcccaccat 607
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 614  aactggaggtaacttggcccttatgtctcactcagtctctgccacgatgcttcccaccat 555

                                       
Query: 608  ggcattaatggactgaacctctgaact 634
            |||||||||||||||||||||||||||
Sbjct: 554  ggcattaatggactgaacctctgaact 528


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 634
Length of database: 1034
Length adjustment: 10
Effective length of query: 624
Effective length of database: 1024
Effective search space:   638976
Effective search space used:   638976
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)