Query= MSMg01no490_l19.b1 MSMg01no490_l19.b1 CHROMAT_FILE:
MSMg01no490_l19.b1 PHD_FILE: MSMg01no490_l19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:14:24 2005
(663 letters)
>mm_chr18_27720153_27721212
Length = 1060
Score = 1174 bits (607), Expect = 0.0
Identities = 648/663 (97%), Gaps = 3/663 (0%)
Strand = Plus / Minus
Query: 1 tctttatatcttttaaatatttcagtctactctaaccttcatgtcgagatatcttaagga 60
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 731 tctttatatcttttaaatatttcagtctactctaaccttcatgtcgagatatctta---a 675
Query: 61 gataaactatagttcttcctgtttcagtgcagataagcaggtttttgtttgtttttttat 120
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 674 gatcaactatagttcttcctgtttcagtgcagataagcaggtttttgtttgtttttttat 615
Query: 121 tttatttttgatgacatctggcttctttaaaattttctatctttgtatcgctatagtttg 180
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 614 tttatttttgatgacatctggcttctttaagattttctatctttgtatcgctatagtttg 555
Query: 181 aatgtgaatatatgagtctcatttcacacatttgcattttaattttgtgaggggatatat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 554 aatgtgaatatatgagtctcatttcacacatttgcattttaattttgtgaggggatatat 495
Query: 241 tcttgttatttacttataatcactctcctctctaagctactttctctttggctatgtcta 300
|| | |||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 494 tcagggtatttacttataatcactctcctctctaggctactttctctttggctatgtcta 435
Query: 301 atgtagtgtttgcctgtttagtattccatcagccttactataccaactgtttcttatttt 360
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 434 atgtagtgtttgcctgtttagtattccatcagccttactatactaactgtttcttatttt 375
Query: 361 ttcacatttatctgatccttcattaatagcacaaaattttgatatattttatacttctat 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 374 ttcacatttatctgatccttcattaatagcacaaaattttgatatattttatacttctat 315
Query: 421 aaaatattttcaattgtctagtaggaaaatttgtgtgtcaaaatttagtagaggacccaa 480
|||||||||||| ||||||||| |||||||||||||||||||| ||||||||||||||||
Sbjct: 314 aaaatattttcagttgtctagtgggaaaatttgtgtgtcaaaaattagtagaggacccaa 255
Query: 481 aaatgtctcagaaggtaagatctctgttcctgcagagaacctgtgctaactttgaatcaa 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 254 aaatgtctcagaaggtaagatctctgttcctgcagagaacctgtgctaactttgaatcaa 195
Query: 541 aatgtaaacttgtgaagaccagtcacaatggacacatctacaaaacacttcattacctca 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 194 aatgtaaacttgtgaagaccagtcacaatggacacatctacaaaacacttcattacctca 135
Query: 601 aactcagtgaacattgcagaagaggacatcaaaagattgtatgggcagaggtagagggag 660
|||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||
Sbjct: 134 aactcagtgaacattgcagaagaggacaccaaaggattgtatgggcagaggtagagggag 75
Query: 661 ttt 663
|||
Sbjct: 74 ttt 72
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 663
Length of database: 1060
Length adjustment: 10
Effective length of query: 653
Effective length of database: 1050
Effective search space: 685650
Effective search space used: 685650
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no490_l19.g1 MSMg01no490_l19.g1 CHROMAT_FILE:
MSMg01no490_l19.g1 PHD_FILE: MSMg01no490_l19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:14:25 2005
(634 letters)
>mm_chr18_27649133_27650165
Length = 1033
Score = 1180 bits (610), Expect = 0.0
Identities = 628/634 (99%), Gaps = 1/634 (0%)
Strand = Plus / Plus
Query: 1 accatgcaaagcaccacattctaagttagcacaattaatatgtagacagagtacctaaag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 accatgcaaagcaccacattctaagttagcacaattaatatgtagacagagtacctaaag 260
Query: 61 aagtgactcaagtttctacttgaaaataatcaatttagtatgtctttaaaatcacaaaag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aagtgactcaagtttctacttgaaaataatcaatttagtatgtctttaaaatcacaaaag 320
Query: 121 caattacaaaaggtaatagttacaggcttgttatgtttttcaaattattttcattttcat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 caattacaaaaggtaatagttacaggcttgttatgtttttcaaattattttcattttcat 380
Query: 181 catcctgttcataaacaaaattttcagatgaaatattctttaaaaaacatatcactttta 240
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 381 catcctgttcataaacaaaattttcagatgaaatattctttaaaaa-catatcactttta 439
Query: 241 tagcgctaacacttaaatattcatagaaatacaaatttcatgcatttatgggagaagaaa 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 tagcgctaacacttaaatattcatagaaatacaaatttcatgcatttatgggagaagaaa 499
Query: 301 taaaaacttacacccacatatacttgccaagtagatgcagtgtattgatagctacgagaa 360
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 taaaaacttacacccacagatacttgccaagtagatgcagtgtattgatagctacgagaa 559
Query: 361 ttaggcagtgagctctttaacaatgctgttgcttttggtgagtactttttgtcttgtttc 420
|||||||||||| |||||||||||||| ||||||||||||||||||||||||||||| ||
Sbjct: 560 ttaggcagtgaggtctttaacaatgctattgcttttggtgagtactttttgtcttgtatc 619
Query: 421 agacacttggactcttctgactccataagcacaaactactaccacaaaaagaaggcaggc 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 agacacttggactcttctgactccataagcacaaactactaccacaaaaagaaggcaggc 679
Query: 481 accatgtttcaatctatggaaaaacctaacctgactctctcttttatgcagattgctgaa 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 accatgtttcaatctatggaaaaacctaacctgactctctcttttatgcagattgctgaa 739
Query: 541 cttgactgatggaacatagttcctttagtttagttggcaaattgtactaagaaaatactt 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 740 cttgactgatggaacatagttcctttagtttagttggcaaattgtactaagaaaatactt 799
Query: 601 atgcattattttgcctaaaatcttcttaactaga 634
||||||| ||||||||||||||||||||||||||
Sbjct: 800 atgcattcttttgcctaaaatcttcttaactaga 833
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 634
Length of database: 1033
Length adjustment: 10
Effective length of query: 624
Effective length of database: 1023
Effective search space: 638352
Effective search space used: 638352
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
