Query= MSMg01no490_m17.b1 MSMg01no490_m17.b1 CHROMAT_FILE:
MSMg01no490_m17.b1 PHD_FILE: MSMg01no490_m17.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:14:29 2005
(689 letters)
>mm_chr18_82824177_82825266
Length = 1090
Score = 1278 bits (661), Expect = 0.0
Identities = 683/691 (98%), Gaps = 3/691 (0%)
Strand = Plus / Plus
Query: 1 taaacaagtaatctaaccatttttgtcaacacagaaaacacaaaatgatctaaagtcaaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 taaacaagtaatctaaccatttttgtcaacacagaaaacacaaaatgatctaaagtcaaa 260
Query: 61 attctacaatacattataaagttgctggattcataattaatagacaaaaactttatcacc 120
||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 261 attctacaatatattataaagttgctggattcataattaatagacaaaaaatttatcacc 320
Query: 121 tctccatataccaacaacagacaggaaatgcaatctaaacacagatcataaaaaaacaaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tctccatataccaacaacagacaggaaatgcaatctaaacacagatcataaaaaaacaaa 380
Query: 181 aacaaaaacagaatgacacaagagtaaatccaacagaaaattcacaagatccttagaatc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aacaaaaacagaatgacacaagagtaaatccaacagaaaattcacaagatccttagaatc 440
Query: 241 caa--tnatgatggtccaggaggaggaaaagtacgctcagggatataagataccctgatg 298
||| | | || ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 caagct-aagagggtccaggaggaggaaaagtacgctcagggatataagataccctgatg 499
Query: 299 gttaactttcctcattatagactcacacctgcaagtgtgtctgtttgcagagagaactaa 358
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 gttaactttcctcattatagactcacacctgcaagtgtgtctgtttgcagagagaactaa 559
Query: 359 ctgaacgttaggggatgtgggtggtagaattccatatgctggagacccaggctgaatgag 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 ctgaacgttaggggatgtgggtggtagaattccatatgctggagacccaggctgaatgag 619
Query: 419 aaaagagagagtgaactgagttccagccttcatccctctctgcttcctgactgacctgga 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 aaaagagagagtgaactgagttccagccttcatccctctctgcttcctgactgacctgga 679
Query: 479 gatgcaatgtgcccagccacctcacacgccagctgccacactctctctaccaaggttatc 538
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 680 gatgcaatgtgcccagccacctcacacgccagctgccacactctccctaccaaggttatc 739
Query: 539 tgtactgtaaaccatgagccaaaatgatctcttccaggcttaggttgcttctttcaaagc 598
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 740 tgtactgtaaaccatgagccaaaatgatctcttccaggcttaggttgcttctttcaaagc 799
Query: 599 cttggtatccatagcaatgaaacaagcaactcactaactcagtggcctgcagacaggtct 658
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 800 cttggtatccatagcaatgaaacaagcaactcactaactcagtggcctgcagacaggtct 859
Query: 659 gccaatatctctaatttagcacaaactacac 689
|||||||||||||||||||||||||||||||
Sbjct: 860 gccaatatctctaatttagcacaaactacac 890
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 689
Length of database: 1090
Length adjustment: 10
Effective length of query: 679
Effective length of database: 1080
Effective search space: 733320
Effective search space used: 733320
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no490_m17.g1 MSMg01no490_m17.g1 CHROMAT_FILE:
MSMg01no490_m17.g1 PHD_FILE: MSMg01no490_m17.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:14:29 2005
(570 letters)
>mm_chr18_83015223_83016192
Length = 970
Score = 1058 bits (547), Expect = 0.0
Identities = 562/567 (99%)
Strand = Plus / Minus
Query: 4 tgtctgctgtctgtgggaacaactgtgtataatcacagccaaatggggattttgtctact 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 tgtctgctgtctgtgggaacaactgtgtataatcacagccaaatggggattttgtctact 566
Query: 64 gatgggttaagggcactggctctcagtgggtccctgcagcatggatgttagaggctagag 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 gatgggttaagggcactggctctcagtgggtccctgcagcatggatgttagaggctagag 506
Query: 124 gatgttggagatgataccaaattcaatccttggagcagacaagcttgtgctagaaagtct 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 gatgttggagatgataccaaattcaatccttggagcagacaagcttgtgctagaaagtct 446
Query: 184 ctagtgccacccgagaggctcttgacatctttctacctcaaggatgaggatacttaatcc 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ctagtgccacccgagaggctcttgacatctttctacctcaaggatgaggatacttaatcc 386
Query: 244 ccttagtagtgtcagcttctctgcctcccatcttctgtgacggtgactctggggtgctgg 303
|| || ||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 385 ccagagcagtgtcagcttctctgcctcccatcttctttgacggtgactctggggtgctgg 326
Query: 304 atccacctccctcttgcagtttgagtaagacttgcccttccagaaactcaggtggaattc 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 atccacctccctcttgcagtttgagtaagacttgcccttccagaaactcaggtggaattc 266
Query: 364 tgtttgccgctgtggtgctgtggcatggtgagggctgataaggggtggagaggggtggta 423
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 265 tgtttgccgctgtggtgctgtggcatggtgagggctgatgaggggtggagaggggtggta 206
Query: 424 agggatggcctcgatcttgtggcaatcctcctgcctctgcctcctgaagcaggtacgcaa 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 agggatggcctcgatcttgtggcaatcctcctgcctctgcctcctgaagcaggtacgcaa 146
Query: 484 agccatgccattagactattaaacttggtacaaaatctgcttgctacccggtggtaaaat 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 145 agccatgccattagactattaaacttggtacaaaatctgcttgctacccggtggtaaaat 86
Query: 544 ctgtcctcagagaaaggaaagtcacaa 570
|||||||||||||||||||||||||||
Sbjct: 85 ctgtcctcagagaaaggaaagtcacaa 59
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 570
Length of database: 970
Length adjustment: 10
Effective length of query: 560
Effective length of database: 960
Effective search space: 537600
Effective search space used: 537600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
