BAC Information

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BAC

Clone NameMSMg01-492J09
Chromosome18 (Build37)
Map Location 56,034,642 - 56,035,101
singlet/doubletsinglet
Overlap genenone
Upstream geneZfp608, LOC100043089, LOC667401, LOC667409, LOC629043
Downstream geneLOC100043099, LOC629057, LOC100043104, LOC676543, LOC667432, Gramd3, LOC667458, Aldh7a1, Rnuxa, 1700065I17Rik, LOC675171, Lmnb1, March3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-492J09.T7 (MSMg01no492_j09.b1)MSMg01-492J09.TJ (MSMg01no492_j09.g1)
ACCAG570307AG570308
length709727
length of high quality
(start - end)
510 (71 - 580)231 (215 - 445)
definitionCHROMAT_FILE: MSMg01no492_j09.b1 PHD_FILE: MSMg01no492_j09.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:16:51 2005CHROMAT_FILE: MSMg01no492_j09.g1 PHD_FILE: MSMg01no492_j09.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:16:51 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATCTATAAXXXXXXXXXXXXXXXXXXXXXXXXXXTTTTCAAAATCCGCGG
AATTCCTCATTTTACCAGCCAAATCCTTAAAATTGATTTATTTTTCCTCA
AGATCTAGTTATTTATCAGTACTCTATCTTACAAACTGTATTTATAGTGC
TATCTGTGGTAAAGATGATGAGGGTCTTGCTTATCATCCCTCACTGCATT
CATTGGAAATAAATTAAAGAGGCTAGTAGCTTGCACCAACTAGTGCTAAT
ATTAAGAGTGGAGCTAAGATTCATCATTAGTGTCCTATCTCCAGAGGTCT
ATAATTCCCACCTTTTTTTTAACCATGAACTTATATTGTCCTGCAAATCT
TTGAGGAAATTCTCAGTGTGTTTTCAGTCATTTCTGGTTATAACACAGTT
CTCTGTCCTTGGTGCTGGATCACAGGACAGTAAAAAATAGTTCCTTGTCA
CGTGGAGCTTCTAGAGGAGTGGAGACCAGACAGAGTATGCATGAGATACT
AGTCCTGCCTTCGGTTTTTAACAATACAAGTCCAATAATATCATGTCCAT
ATTCTGACTCTTAACTTCTAGATCTAAAATTAGAGTTAGAGAAAAGTGCT
GAAAAAGAATGGTAGGGAATCGATGCCAGTTCCTTTTAAAAAATTCAGCT
CTCTAGAAACCCAGCCTTGAGTTAACACCCTATTGACTTGATATCAGTGA
TTTGATAAA
CAATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXATCTCTAAACACACACGAATTCTTAGG
TAACTTTAGAGTATGAGCCATATTCATCTGAAAGTAGCTAACACCACCTT
GGTTTTACTCTACTCTTGGCCAGGATGAATTCTAAACACATTCCCATCAT
TTATTATAACAGGGAACTGATCAGGAAAATTTGAGAGCTAACTATTCATC
ATATACTATCTGGTGTATGTGCGTGTTTGGGTGTGTGCGCCTGTTCCTCA
GTTGCTCTCCTCCTTATATTTTGAGACAAGGTCTCTGACTAAGTTCTGGA
ACACACCAATTAGCTAGACTACCTCTAGGAATCTGCCTACCTCAATCACA
GAGCTCCGGGGCTGCAAACACACTTACTACTCATCATGACATTGTACCTT
GTATGAATGTTGGGAATTCTAATTCAGTTCCTCTTTTCTTGAGTATCACA
TAATTTATTAAATGAACCATCTTTCCACTCTCAGTCCCACAGTCTTTTAA
GCTATAAATGTTAAAAGGGCTTTGTGCTTTACACAATTGTTGTTGCCCAG
CATACACTAGTTACTATATGCCAAAAGACAACTACATTCTTTTCGATTTC
TTTCTTTTTCATATTTCCTACTTCTCGTTTCTTACTTCCTAACTAACCAG
CTTTTCTGTACTATTTATAAGATTAAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no492_j09.b1 MSMg01no492_j09.b1 CHROMAT_FILE:
MSMg01no492_j09.b1 PHD_FILE: MSMg01no492_j09.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:16:51 2005
         (510 letters)



>mm_chr18_56034192_56035101
          Length = 910

 Score =  839 bits (434), Expect = 0.0
 Identities = 453/468 (96%), Gaps = 15/468 (3%)
 Strand = Plus / Minus

                                                                       
Query: 50  tactctatcttacaaactgtatttatagtgctatctgtggtaaagatgatgagggtcttg 109
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 910 tactctatcttacaaactgtatttatagtgctatctgtggtaaagatgatgagggtcttg 851

                                                                       
Query: 110 cttatcatccctcactgcattcattggaaataaattaaagaggctagtagcttgcaccaa 169
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 850 cttatcatccctcactgcattcattggaaataaattaaagaggctagtagcttgcaccaa 791

                                                                       
Query: 170 ctagtgctaatattaagagtggagctaagattcatcattagtgtcctatctccagaggtc 229
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 790 ctagtgctaatattaagagtggagctaagattcatcattagtgtcctatctccagaggtc 731

                                                                       
Query: 230 tataattcccacc-------ttttttttaaccatgaacttatattgtcctgcaaatcttt 282
           |||||||||||||               ||||||||||||||||||||||||||||||||
Sbjct: 730 tataattcccaccacaacag--------aaccatgaacttatattgtcctgcaaatcttt 679

                                                                       
Query: 283 gaggaaattctcagtgtgttttcagtcatttctggttataacacagttctctgtccttgg 342
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 678 gaggaaattctcagtgtgttttcagtcatttctggttataacacagttctctgtccttgg 619

                                                                       
Query: 343 tgctggatcacaggacagtaaaaaatagttccttgtcacgtggagcttctagaggagtgg 402
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 618 tgctggatcacaggacagtaaaaaatagttccttgtcacgtggagcttctagaggagtgg 559

                                                                       
Query: 403 agaccagacagagtatgcatgagatactagtcctgccttcggtttttaacaatacaagtc 462
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 558 agaccagacagagtatgcatgagatactagtcctgccttcggtttttaacaatacaagtc 499

                                                           
Query: 463 caataatatcatgtccatattctgactcttaacttctagatctaaaat 510
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 498 caataatatcatgtccatattctgactcttaacttctagatctaaaat 451


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 510
Length of database: 910
Length adjustment: 10
Effective length of query: 500
Effective length of database: 900
Effective search space:   450000
Effective search space used:   450000
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)