BAC Information

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BAC

Clone NameMSMg01-492L01
Chromosome18 (Build37)
Map Location 85,347,934 - 85,348,444
singlet/doubletsinglet
Overlap genenone
Upstream geneZfp407, Cndp1, EG640234, Cndp2, LOC100039711, LOC100039725, B230399E16Rik, Cyb5, Fbxo15, 1700034H14Rik, LOC100039765
Downstream geneLOC665382, LOC545269, LOC545270
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-492L01.T7 (MSMg01no492_l01.b1)MSMg01-492L01.TJ (MSMg01no492_l01.g1)
ACCAG570387AG570388
length723727
length of high quality
(start - end)
517 (41 - 557)547 (73 - 619)
definitionCHROMAT_FILE: MSMg01no492_l01.b1 PHD_FILE: MSMg01no492_l01.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:16:59 2005CHROMAT_FILE: MSMg01no492_l01.g1 PHD_FILE: MSMg01no492_l01.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:16:59 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TXXXXXXXXXXXXXXXXXXXXXXXCTANATCCAGAAGAGCCGCGGAATTC
TTGGTCTTTCCCCACTATCCCTTAACAAGTTGTGGCTACCAACTATAACT
CTAATGTCAGCTACTCTTCTCCAGGTAACACCATTGCTGTCAAAATCACT
GCCTTAGAAGTGGAGCACTATGTGTTCGGGGCCATCCCCTATTGAGACAC
AAGTGAGTCTGTGAGCATTCAGATCTAGGTGGCCTACAGACCAGTTTAAC
TGAAAGTAAATTAAAAAAAAAAATAGGATGCGATCCTTGCTTCTAAAGTC
AAGACTTATTTTTTTTCTTGTCTTTGGAGCATTGGACTCCGTGGTCACTG
TTACGGGACAGTTTCCTGAGTCCAGCCATCTCAGGGACAAGTCTCATCTT
GCTGGCAGGGTGAAATCTGAGTTCATGTTCCCAGACTCCAGAACCAACTC
CTATCCTGTTCCTTCAGGTGTTTTATGTTTTTCTGTTATCCAGTAAAGGG
GGTAAAGAGGGAAGTTACCGTTTTCCTGTTATCTAAACTAAGTCACACAA
ATAGTAACGATAGTGTCTTTCCTGACTTAATTGACTGCGTGCAGCTTGCC
CACTCCTTTGTTTCCTTACTACTCTAAATTCCAGATTAGAATCCAGGAGT
GGACTTTGACTGCAAAGCTGAGTTGAGGACCCTGGAATGGGATCCTTGCT
TCTAAAGTCAATACGTGAGCTTA
TATAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXCTGATCTTTCCAAACTTTTATCATGAAT
GGGTGTTGGATCTTGTCAAATGCTTTTTCTGCATCTAACGAGATGATCAT
GTGGTTTTTGTCTTTGAGTTTGTTTATATAATGGATTACATTGATGGATT
TTCGTATATTAAACCATCCCTGCATCCCTGGAATAAAACCTACTTGGTCA
GGATGGATGATTTCTTTAATGTGTTCTTGGATTCGGTTAGCGAGAATTTT
ATTAAGGATTTTTGCATCGATATTCATAAGAGAAATTGGTCTGAAGTTCT
CTATCTTTGTTGGATCTTTCTGTGGTTTAGGTATCAGAGTAATAGTGGCT
TCATAAAATGAGTTGGGTAGAGTACCTTCTACTTCTATCTTGTGAAATAG
TTTGTGCAGAACTGGAATTAGATCTTCTTTGAAGGTCTGATAGAACTCTG
CACTAAACCCATCTGGTCCTGGGCTTTTTTTGGTTGGGAGACTATTAATA
ACTGCTTCTATTTCTTTAGGGGATATGGGACTGTTTAGAAGGTCAACTTG
ATCCTGATTCAACTTTGGTACCTGGTATCTTGTCCAGAAATTTGTCCATT
TCGTCCAGGTTTTCCAGTTTTGTTGAGTATAAGCTTTTGAAGCACGATCT
GATGGGGGTTTGGATTTTTCCCCGATC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no492_l01.b1 MSMg01no492_l01.b1 CHROMAT_FILE:
MSMg01no492_l01.b1 PHD_FILE: MSMg01no492_l01.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:16:59 2005
         (517 letters)



>mm_chr18_85347730_85348645
          Length = 916

 Score =  830 bits (429), Expect = 0.0
 Identities = 491/521 (94%), Gaps = 18/521 (3%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcttggtctttccccactatcccttaacaagttgtggctaccaactataactctaa 64
           ||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcttggtcttttcccactaccccttaacaagttgtggctaccaactataactctaa 264

                                                                       
Query: 65  tgtcagctactcttctccaggtaacaccattgctgtcaaaatcactgccttagaagtgga 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tgtcagctactcttctccaggtaacaccattgctgtcaaaatcactgccttagaagtgga 324

                                                                       
Query: 125 gcactatgtgttcggggccatcccctattgagacacaagtgagtctgtgagcattcagat 184
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gcactatgtgttctgggccatcccctattgagacacaagtgagtctgtgagcattcagat 384

                                                                       
Query: 185 ctaggtggcctacagaccagtttaactgaaagtaaattaaaaaaaaaaataggatgcgat 244
           |||||||||| |||||||||||||||||||||||||| |||||||||||||||||| |||
Sbjct: 385 ctaggtggcccacagaccagtttaactgaaagtaaat-aaaaaaaaaaataggatgtgat 443

                                                                       
Query: 245 ccttgcttctaaagtcaagacttatttttttt--------cttgtctttggagcattgga 296
           ||||||||||||||||||||||||                || |||||||||||| ||||
Sbjct: 444 ccttgcttctaaagtcaagactta--------agcaaacactcgtctttggagcactgga 495

                                                                       
Query: 297 ctccgtggtcactgttacgggacagtttcctgagtccagccatctcagggacaagtctca 356
           ||||||||||||||||| ||||||||| |||||||||||||||||||||||||||| |||
Sbjct: 496 ctccgtggtcactgttaggggacagttccctgagtccagccatctcagggacaagtttca 555

                                                                       
Query: 357 tcttgctggcagggtgaaatctgagttcatgttcccagactccagaaccaactcctatcc 416
           ||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 556 tcttgctggcagggtaaaatctgagttcatgttcc-agactccagaaccaactcctatcc 614

                                                                       
Query: 417 tgttccttcaggtgttttatgtttttctgttatccagtaaagggggtaaagagggaagtt 476
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 615 tgttccttcaggtgttttatgtttttctgttatccagtaaagggggtaaagagggaagtt 674

                                                    
Query: 477 accgttttcctgttatctaaactaagtcacacaaatagtaa 517
           || ||||||||||||||||||||||||||||||||||||||
Sbjct: 675 actgttttcctgttatctaaactaagtcacacaaatagtaa 715


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 517
Length of database: 916
Length adjustment: 10
Effective length of query: 507
Effective length of database: 906
Effective search space:   459342
Effective search space used:   459342
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)