Query= MSMg01no493_b04.b1 MSMg01no493_b04.b1 CHROMAT_FILE:
MSMg01no493_b04.b1 PHD_FILE: MSMg01no493_b04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:17:29 2005
(678 letters)
>mm_chr18_6211889_6212966
Length = 1078
Score = 1236 bits (639), Expect = 0.0
Identities = 666/675 (98%)
Strand = Plus / Minus
Query: 4 ggaattctaggctgaggcaggaagaggtcaggttcctagtcaggaatgtgtagtaacatc 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 878 ggaattctaggctgaggcaggaagaggtcaggttcctagtcaggaatgtgtagtaacatc 819
Query: 64 ctattctaaaaggcaggacgccttaaaacgtaaacttgatgacattcagacaacttttga 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 818 ctattctaaaaggcaggacgccttaaaacgtaaacttgatgacattcagacaacttttga 759
Query: 124 ggctaagcttgtattctgttcttttgtcagccaaaaccagaagatggtgttggagcagga 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 758 ggctaagcttgtattctgttcttttgtcagccaaaaccagaagatggtgttggagcagga 699
Query: 184 acggctaagggtggagcatgagaggctgaaggctacagaccaagagaagagcaggaagct 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 698 acggctaagggtggagcatgagaggctgaaggctacagaccaagagaagagcaggaagct 639
Query: 244 gcatgagctcacgtgagtgtcacttgggttgaagtttgcaaatacaaggctgtaggtact 303
||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 638 gcacgagctcacgtgagtgtcacttgggttgaagtttgcagatacaaggctgtaggtact 579
Query: 304 gccacgggcatggctgtcttctctctgccttgctctgatttgtgacatgtgcttggtttt 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 578 gccacgggcatggctgtcttctctctgccttgctctgatttgtgacatgtgcttggtttt 519
Query: 364 gagtgaaagcaagactgtagtcctgtttctaagaccgcctgctcctttcttggtgtctaa 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 518 gagtgaaagcaagactgtagtcctgtttctaagaccgcctgctcctttcttggtgtctaa 459
Query: 424 tatttcagagtatatcataaagacatcttaaaatctgatgataatctagaatattgtagg 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 458 tatttcagagtatatcataaagacatcttaaaatctgatgataatctagaatattgtagg 399
Query: 484 atatgcttccaataccatattttgtcaaatttagtttttcataaaactatatgttttggt 543
|||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 398 atatgcttccaaaactatattttgtcaaatttagtttttcataaaactatatgttttggt 339
Query: 544 ctttggtttttcaaataaaattgtggtgtttggtttttgcttttgtttctcccttccctt 603
||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||
Sbjct: 338 ctttggtttttcaaataaagttttggtgtttggtttttgcttttgtttctcccttccctt 279
Query: 604 gcccccattaatgtatatgaatggcctgtccagattttttcatgtttacagtgtgtatgc 663
|||||||||||||||||||||||||||| ||| |||||||||||||||||||||| ||||
Sbjct: 278 gcccccattaatgtatatgaatggcctgcccacattttttcatgtttacagtgtgcatgc 219
Query: 664 ctggtacccatagag 678
|||||||||||||||
Sbjct: 218 ctggtacccatagag 204
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 678
Length of database: 1078
Length adjustment: 10
Effective length of query: 668
Effective length of database: 1068
Effective search space: 713424
Effective search space used: 713424
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no493_b04.g1 MSMg01no493_b04.g1 CHROMAT_FILE:
MSMg01no493_b04.g1 PHD_FILE: MSMg01no493_b04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:17:29 2005
(682 letters)
>mm_chr18_6039230_6040311
Length = 1082
Score = 1311 bits (678), Expect = 0.0
Identities = 681/682 (99%)
Strand = Plus / Plus
Query: 1 tggtttggactgattactcccaaacttcattttagagaaaagaaaaaagactttatgtga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tggtttggactgattactcccaaacttcattttagagaaaagaaaaaagactttatgtga 260
Query: 61 tatagatgtataggtatgtacaaaagaagaccaactatgtataataaacacattatctta 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tatagatgtataggtatgtacaaaagaagaccaactatgtataataaacacattatctta 320
Query: 121 aattcttttttcagactcaaaaaattgtaaagtatatctaaatctgatgagcctttaaaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aattcttttttcagactcaaaaaattgtaaagtatatctaaatctgatgagcctttaaaa 380
Query: 181 taacaggtcctaagctccaaaggtaaggctatgttcatgttaattcccagagaagaaaat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 taacaggtcctaagctccaaaggtaaggctatgttcatgttaattcccagagaagaaaat 440
Query: 241 caggtaatgctatattatttgcaaccaggtggacatggatatactgcgacttcacagttc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 caggtaatgctatattatttgcaaccaggtggacatggatatactgcgacttcacagttc 500
Query: 301 tatttctataacttatgctacactgcatgtggctatataagattatgttttaaggggctg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tatttctataacttatgctacactgcatgtggctatataagattatgttttaaggggctg 560
Query: 361 gtgagatggctcagtaggtaagagcactgactgctcttctgaaggtcctgagttcaaatc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gtgagatggctcagtaggtaagagcactgactgctcttctgaaggtcctgagttcaaatc 620
Query: 421 ccagcaaccacaaggtggctcacaaccacccataataagatctgaaaccctcttctggtg 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ccagcaaccacaaggtggctcacaaccacccataataagatctgaaaccctcttctggtg 680
Query: 481 catctgaagtcagctacagtgtacttacatataataataaaaataataaaaaaggattat 540
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 681 catctgaagtcagctacagtgtacttacatataataataaaaataataaaaaaagattat 740
Query: 541 gttttaaatgcaatgaccaactatcacataagtcataagcagatgccacacacattttct 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 gttttaaatgcaatgaccaactatcacataagtcataagcagatgccacacacattttct 800
Query: 601 aagaaacattctctagtcctattttgtgctttcaagacttactagcttgtcaactagttc 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 aagaaacattctctagtcctattttgtgctttcaagacttactagcttgtcaactagttc 860
Query: 661 agttgccaatagctaatgactc 682
||||||||||||||||||||||
Sbjct: 861 agttgccaatagctaatgactc 882
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 37
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 682
Length of database: 1082
Length adjustment: 10
Effective length of query: 672
Effective length of database: 1072
Effective search space: 720384
Effective search space used: 720384
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
