Query= MSMg01no493_n18.b1 MSMg01no493_n18.b1 CHROMAT_FILE:
MSMg01no493_n18.b1 PHD_FILE: MSMg01no493_n18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:18:33 2005
(693 letters)
>mm_chr18_58803155_58804247
Length = 1093
Score = 1309 bits (677), Expect = 0.0
Identities = 686/689 (99%)
Strand = Plus / Minus
Query: 5 gaattctctgtgatcagcctgacgtctaccagagtgaaccttaagaatagacagcagcgg 64
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 962 gaattctctgtgagcagcctgacgtctaccagagtgaaccttaagaatagacagcagcgg 903
Query: 65 ctatttatgtgttgattacttaggagccctgcagcctactcgcctgtcacaggcacaagg 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 902 ctatttatgtgttgattacttaggagccctgcagcctactcgcctgtcacaggcacaagg 843
Query: 125 catagccatagacaactgcaacacacactacagcttgaaggagttaagaagagatgacaa 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 842 catagccatagacaactgcaacacacactacagcttgaaggagttaagaagagatgacaa 783
Query: 185 acagatagggagtcacaaaacaccagaaggacagactgagccaatcttgcattaatcaga 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 782 acagatagggagtcacaaaacaccagaaggacagactgagccaatcttgcattaatcaga 723
Query: 245 ataggtgcatggttatattgtaataaaaataatctataataataattctaattatcccca 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 722 ataggtgcatggttatattgtaataaaaataatctataataataattctaattatcccca 663
Query: 305 aatagtaacttaacagttctggttgtttatattatacattcagcttaagttttatgacac 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 662 aatagtaacttaacagttctggttgtttatattatacattcagcttaagttttatgacac 603
Query: 365 ttttgtctagtgaagttatttggaagataaaatgagtattatgtccctggtcattacttg 424
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 602 ttttgtctagtgaagttatttggaagataaaatgagtattatgtccatggtcattacttg 543
Query: 425 gttgtccaaagcaaattttacatccagctatagtttttataaaaaagatgtatttatttt 484
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 542 gttgtccaaagcaaattttacatccagctatagtttttataaaaaagatttatttatttt 483
Query: 485 atttatatgagtacactgtagctgtctttagacacaccagaagtggtcatcagatcccat 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 482 atttatatgagtacactgtagctgtctttagacacaccagaagtggtcatcagatcccat 423
Query: 545 tacagatggttgtgagctaccatgtagttactgggatttgaactcaggatctttggaaga 604
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 422 tacagatggttgtgagctaccatgtagttactgggatttgaactcaggatctttggaaga 363
Query: 605 gcggctagtgctcttaaccactgaaccatctttccagccttcccacccccaactatagtt 664
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 362 gcggctagtgctcttaaccactgaaccatctttccagccttcccacccccaactatagtt 303
Query: 665 ttaagaggatttatgttgcagtaaatatt 693
|||||||||||||||||||||||||||||
Sbjct: 302 ttaagaggatttatgttgcagtaaatatt 274
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 693
Length of database: 1093
Length adjustment: 10
Effective length of query: 683
Effective length of database: 1083
Effective search space: 739689
Effective search space used: 739689
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no493_n18.g1 MSMg01no493_n18.g1 CHROMAT_FILE:
MSMg01no493_n18.g1 PHD_FILE: MSMg01no493_n18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:18:33 2005
(648 letters)
>mm_chr18_58617281_58618326
Length = 1046
Score = 1151 bits (595), Expect = 0.0
Identities = 637/651 (97%), Gaps = 6/651 (0%)
Strand = Plus / Plus
Query: 1 atggtaatgcagttgataaagaactgttttctcaccagtgataccagagcagctggcttg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 199 atggtaatgcagttgataaagaactgttttctcaccagtgataccagagcagctggcttg 258
Query: 61 ccacataaagaagaaaacggagtttcttgctaatatttacacaaaaatcaaataaaaatt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 ccacataaagaagaaaacggagtttcttgctaatatttacacaaaaatcaaataaaaatt 318
Query: 121 gattaaatccaaaactatgaaactcttaaaagcttgaggtagaaaactccaacttagaca 180
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 gattaaagccaaaactatgaaactcttaaaagcttgaggtagaaaactccaacttagaca 378
Query: 181 cataattaaaaatagt-aaaaaaaaaaagtagactttaccaagattaaaagctgtatgca 239
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 cataattaaaaatagtaaaaaaaaaaaagtagactttaccaagattaaaagctgtatgca 438
Query: 240 taaaagaagctattttaaaaactcaaagacaactcacagagtaaagagtaatcttttcaa 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 taaaagaagctattttaaaaactcaaagacaactcacagagtaaagagtaatcttttcaa 498
Query: 300 atcatgtatccaacaagaga-ttttttttaggagattatataaatgactttttgaaatca 358
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 499 atcatgtatccaacaagagatttttttttaggagattatataaatgactttttgaaatca 558
Query: 359 gtgataaaaagacaacccaactgaaaaactgataacggcttcatttggttcagtgtggtt 418
||||||||||||||||||||||| ||||||||||| |||||||||||||||| | ||| |
Sbjct: 559 gtgataaaaagacaacccaactgtaaaactgataatggcttcatttggttca-tttgg-t 616
Query: 419 tctcgaggatgagttgtagtgtgtagtcatgagctagctgtcttctccctccagtatcct 478
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 617 tctcgaggatgagtcatagtgtgtagtcatgagctagctgtcttctccctccagtatcct 676
Query: 479 ggaactgcaggaaagtgcttccttgactgactttta-caattcagttcaatactcacttt 537
||||||||||||||||| |||||||||||| ||||| |||||||||||||||||||||||
Sbjct: 677 ggaactgcaggaaagtgtttccttgactga-ttttaacaattcagttcaatactcacttt 735
Query: 538 acataggatttctaatacaaaagattagtaagtgctggctactacatagacacatggaat 597
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 736 gcataggatttctaatacaaaagattagtaagtgctggctactacatagacacatggaat 795
Query: 598 atccgtgcacataagggggaatggaaaacaggaatggctgtttgcaacttg 648
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 796 atccgtgcacataagggggaatggaaaacaggaatggctgtttgcaacttg 846
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 648
Length of database: 1046
Length adjustment: 10
Effective length of query: 638
Effective length of database: 1036
Effective search space: 660968
Effective search space used: 660968
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
