Query= MSMg01no494_c03.b1 MSMg01no494_c03.b1 CHROMAT_FILE:
MSMg01no494_c03.b1 PHD_FILE: MSMg01no494_c03.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:18:54 2005
(491 letters)
>mm_chr18_62513347_62514237
Length = 891
Score = 874 bits (452), Expect = 0.0
Identities = 479/488 (98%)
Strand = Plus / Plus
Query: 4 ggaattcactttttacctggcacatctcagataggagaggcagttgcctgtgactcacaa 63
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcactttggacctggcacatctcagataggagaggcagttgcctgtgactcacaa 263
Query: 64 cctcctgaggaaacttcgccccataaatagcttgttttctctttgactggttcatattcc 123
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 264 cctcctgaggaaacttcgcctcataaatagcttgttttctctttgactggttcatattcc 323
Query: 124 aggagttcttcctcatttttgatcagaaagcttggtaggtctcaaactcaggatgaatgg 183
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 aggagttctccctcatttttgatcagaaagcttggtaggtctcaaactcaggatgaatgg 383
Query: 184 caaacagaggcgcccattatatcaaagatgacaatactggttgccaggttctctcagcat 243
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 caaacagagccgcccattatatcaaagatgacaatactggttgccaggttctctcagcat 443
Query: 244 ctctcagtccctacttgttacagagtcctcctaattttcatatgccaacccctacccaga 303
|||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||
Sbjct: 444 ctctcagtccctacttgttacagaatcctcctggttttcatatgccaacccctacccaga 503
Query: 304 actctccagcactagggctgggctgtccttctcccagatgttcttctttatataatctag 363
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 504 actctccagcactagggctgggctgtccttctcccagctgttcttctttatataatctag 563
Query: 364 ccattttggttacatagtcctttttggcccttttcatctctgggccagtctcttggtcta 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 ccattttggttacatagtcctttttggcccttttcatctctgggccagtctcttggtcta 623
Query: 424 ggctgtccctcttgatcagcagctcctctcttgctctcctccccttctctcttctcatgg 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 ggctgtccctcttgatcagcagctcctctcttgctctcctccccttctctcttctcatgg 683
Query: 484 cctggctc 491
||||||||
Sbjct: 684 cctggctc 691
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 491
Length of database: 891
Length adjustment: 10
Effective length of query: 481
Effective length of database: 881
Effective search space: 423761
Effective search space used: 423761
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no494_c03.g1 MSMg01no494_c03.g1 CHROMAT_FILE:
MSMg01no494_c03.g1 PHD_FILE: MSMg01no494_c03.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:18:54 2005
(576 letters)
>mm_chr18_62664123_62665097
Length = 975
Score = 1042 bits (539), Expect = 0.0
Identities = 568/579 (98%), Gaps = 3/579 (0%)
Strand = Plus / Minus
Query: 1 cttcatagtttg---tttttttgtctgatatgtatatgtactgaaggtttaactttggac 57
||||||| |||| ||||||| |||||||| |||||||| ||||| |||||||||||||
Sbjct: 786 cttcatattttgttttttttttttctgatatatatatgtagtgaagatttaactttggac 727
Query: 58 tctgaaaagcacacgagccaattataaaactgttcatgactttgcttgttgaaagctttg 117
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 726 tctgaaaagcacacgagccaattataaaactgttcatgactttgcttgttgaaagctttg 667
Query: 118 aaacaaatgtttgtaaggaggtagatttttaaactacttgattctgcataatttatgcca 177
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 666 aaacaaatgtttgtaaggaggtagatttttaaactacttgattctgcataatttatgcca 607
Query: 178 tggcgcattgtttttacctggcgactttgatgatctctgctctccttggcatcagatctg 237
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 606 tggcgcattgtttttacctggcgactttgatgatctctgctctccttggcatcagatctg 547
Query: 238 atataaaactgcaatcatgaagacaaatttcatgaactattcttgcatcagcaagaggac 297
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 546 atataaaactgcaatcatgaagacaaatttcatgaactattcttgcatcagcaacaggac 487
Query: 298 atagtagtatatactagtgtttcatggaccaaatgattctaatcaccatgactctctctc 357
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 486 atagtagtatatactagtgtttcatggaccaaatgattctagtcaccatgactctctctc 427
Query: 358 ttctcatttcccaggcaccatctatgctcctcgaagaaaagggcagttgtctgcagacat 417
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 ttctcatttcccaggcaccatctatgctcctcgaagaaaagggcagttgtctgcagacat 367
Query: 418 ttgtatggagacaataggagaggagatctcagagatgcgccagatgaagaggggcatatt 477
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 ttgtatggagacaataggagaggagatctcagagatgcgccagatgaagaggggcatatt 307
Query: 478 tcagcgagtagtggcgatttttatccactactgtgatgtcaatggagagccagttgaaga 537
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 tcagcgagtagtagcgatttttatccactactgtgatgtcaatggagagccagttgaaga 247
Query: 538 cgactacatttaagtagacttttcctggctcttctggcc 576
|||||||||||||||||||||||||||||||||||||||
Sbjct: 246 cgactacatttaagtagacttttcctggctcttctggcc 208
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 576
Length of database: 975
Length adjustment: 10
Effective length of query: 566
Effective length of database: 965
Effective search space: 546190
Effective search space used: 546190
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
