BAC Information

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BAC

Clone NameMSMg01-494M12
Chromosome18 (Build37)
Map Location 60,334,819 - 60,460,793
singlet/doubletdoublet
Overlap geneEG240327, LOC546714, EG225594, F830016B08Rik
Upstream gene4833446K15Rik, LOC667549
Downstream geneLOC667578, EG667584, LOC435565, Iigp1, EG629292, LOC667597, 2010002N04Rik, Dctn4, Rbm22, Myoz3, Synpo, LOC100042675, Ndst1, Rps14, LOC667619, Cd74, Tcof1, LOC100042699, Arsi, Camk2a, Slc6a7, Cdx1, Pdgfrb, Csf1r, A630042L21Rik, Slc26a2, Pde6a, EG667279, Ppargc1b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-494M12.T7 (MSMg01no494_m12.b1)MSMg01-494M12.TJ (MSMg01no494_m12.g1)
ACCAG571980AG571981
length734720
length of high quality
(start - end)
405 (28 - 432)534 (67 - 600)
definitionCHROMAT_FILE: MSMg01no494_m12.b1 PHD_FILE: MSMg01no494_m12.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:19:42 2005CHROMAT_FILE: MSMg01no494_m12.g1 PHD_FILE: MSMg01no494_m12.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:19:42 2005
singlet/doubletdoubletdoublet
BLAST hitpluralunique
Map location.(60,460,402 - 60,460,793)(60,334,819 - 60,335,352)
sequence
TGCGGCCGCTAAACGACTCATCTCCCGGAGAGGATCCGCGGAATTCGTGT
TATAGACCACTTGATATTGTCAGGGTCAGAAGCTATGGATAAGTTGAGTT
TGATCTAGGTTTTGAATATTTCCATCGAAGGAGAACTTTGGCATCTTCAG
TCACTGTGTCAAGGATATGAAGTTGTAAATAATAGATTGCAGGGAAGTAA
AGACCTACAGCAAGGAGCCTACCAAAAGTTGATACCAATTTCTTGAAATC
ATTCCTAAATGTTTCCTCTCTATACTTCTTCAACAAATGAGGAGTCTTCA
TTGTTTTCTTTACCTGTTCAACAGGCACTTGGAAATCCTTAGCCACCAAC
TCCAGGGATTCATCATCCACTCCAAAGATTTTTTGATAGCAGTTTAAAGT
GTTCTTTATCTTCTTCATATCTTTATTCCTGAGGCTGCCCAGTACAGGAA
AAATTGCCTCTACTCCAATCTTGAAAGCTTCTAGCCAGATAAACTGCCGT
GTAACCCTGTACTTTCTGTCAATGGCTTGGCCTGTAAAGTTATGCATGGA
AAGCATAAAATTGTGGGGCCTTTTGAACATGGAGTTCCCTTTTTCATGGA
ATCCTCCATGGAATGGTAAATTCTAATTTCGATTAATCTTATCCTAGAGA
TTCTGCAAAATTGGTGGGCACCGGCATGGTATTTATTCTTAAAGAATTTT
CCCCGAATAAACTTTCGGTTCTTGCTTCTGGGCG
TTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXAGAAAGCTACATAACAATCCTTCCAAGCTGTGTC
TTCTTTAGATAGCTGTGTGATGAGCATTGTTTTCTGTCTAAACTAATGTA
GCCATTAATAGCTAAGCGCATATGTATTAAGAGCATACTAATCAACACCT
CACAAAAGCCACTTAGTGGGATGAGAAGAGTTGGCATGCCAACATTACTT
AATCTTTCTGGTTTAGATGCTGAGTGTAATTTTAAAAATGTCAGCAGCTG
GCACTTCATAGCATCTTTCATTGTTCTCCATAAAAGCACTTCGTAAATAT
TTATCCTATAGCATCACTGCAACTTAAAAGAACTCCAGGACTCAAACAGA
GGGACCTTAGATGAAACACCCGACAGGAGGGAGAGGGAACTTATAGAGCC
CACCTCCAGCAGGAAGAAAGGACATCAAGTGAGGAATGGGGTTGCCATCC
TACAGTTACAACTCTGACCCATAATTGTTTCTGTCTGAAAGAAATACAGG
GATGGAAATAGAGAGGAACCGGAGGAAAAGAAGGTCCAGAGATAGGCCCA
AAGTAGGATCCAGCTCAAGGGGAGGTCCCAAGGCCTGACACTATCACTGA
GGCTATGGAGCACTCACAAAAAGGGACCTATCATGACTGCCCTTTCAAAG
ACCCAACAAGCAGCTGAAAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no494_m12.b1 MSMg01no494_m12.b1 CHROMAT_FILE:
MSMg01no494_m12.b1 PHD_FILE: MSMg01no494_m12.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:19:42 2005
         (405 letters)



>mm_chr18_60460189_60460993
          Length = 805

 Score =  743 bits (384), Expect = 0.0
 Identities = 390/392 (99%)
 Strand = Plus / Minus

                                                                       
Query: 14  gaattcgtgttatagaccacttgatattgtcagggtcagaagctatggataagttgagtt 73
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 605 gaattcgtggtatagaccacttgatattgtcagggtcagaagctatggataagttgagtt 546

                                                                       
Query: 74  tgatctaggttttgaatatttccatcgaaggagaactttggcatcttcagtcactgtgtc 133
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 545 tgatctaggttttgaatatttccatcgaaggagaactttggcatcttcagtcactgtgtc 486

                                                                       
Query: 134 aaggatatgaagttgtaaataatagattgcagggaagtaaagacctacagcaaggagcct 193
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 aaggatatgaagttgtaaataatagattgcagggaagtaaagacctacagcaaggagcct 426

                                                                       
Query: 194 accaaaagttgataccaatttcttgaaatcattcctaaatgtttcctctctatacttctt 253
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 accaaaagttgataccaatttcttgaaatcattcctaaatgtttcctctctatacttctt 366

                                                                       
Query: 254 caacaaatgaggagtcttcattgttttctttacctgttcaacaggcacttggaaatcctt 313
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 caacaaatgaggagtcttcattgttttctttacctgttcaacaggcacttggaaatcctt 306

                                                                       
Query: 314 agccaccaactccagggattcatcatccactccaaagattttttgatagcagtttaaagt 373
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 305 agccaccaactccagggattcatcatccactccaaagattttttgatagtagtttaaagt 246

                                           
Query: 374 gttctttatcttcttcatatctttattcctga 405
           ||||||||||||||||||||||||||||||||
Sbjct: 245 gttctttatcttcttcatatctttattcctga 214


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 405
Length of database: 805
Length adjustment: 9
Effective length of query: 396
Effective length of database: 796
Effective search space:   315216
Effective search space used:   315216
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no494_m12.g1 MSMg01no494_m12.g1 CHROMAT_FILE:
MSMg01no494_m12.g1 PHD_FILE: MSMg01no494_m12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:19:42 2005
         (534 letters)



>mm_chr18_60334619_60335552
          Length = 934

 Score = 1017 bits (526), Expect = 0.0
 Identities = 532/534 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   agaaagctacataacaatccttccaagctgtgtcttctttagatagctgtgtgatgagca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agaaagctacataacaatccttccaagctgtgtcttctttagatagctgtgtgatgagca 260

                                                                       
Query: 61  ttgttttctgtctaaactaatgtagccattaatagctaagcgcatatgtattaagagcat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttgttttctgtctaaactaatgtagccattaatagctaagcgcatatgtattaagagcat 320

                                                                       
Query: 121 actaatcaacacctcacaaaagccacttagtgggatgagaagagttggcatgccaacatt 180
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 321 actaatcaacacctcacaaaagccacttagtgggatgagaaaagttggcatgccaacatt 380

                                                                       
Query: 181 acttaatctttctggtttagatgctgagtgtaattttaaaaatgtcagcagctggcactt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 acttaatctttctggtttagatgctgagtgtaattttaaaaatgtcagcagctggcactt 440

                                                                       
Query: 241 catagcatctttcattgttctccataaaagcacttcgtaaatatttatcctatagcatca 300
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 441 catagcatctttcattgttctccataaaagcacttcgtaaatatttaccctatagcatca 500

                                                                       
Query: 301 ctgcaacttaaaagaactccaggactcaaacagagggaccttagatgaaacacccgacag 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ctgcaacttaaaagaactccaggactcaaacagagggaccttagatgaaacacccgacag 560

                                                                       
Query: 361 gagggagagggaacttatagagcccacctccagcaggaagaaaggacatcaagtgaggaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gagggagagggaacttatagagcccacctccagcaggaagaaaggacatcaagtgaggaa 620

                                                                       
Query: 421 tggggttgccatcctacagttacaactctgacccataattgtttctgtctgaaagaaata 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tggggttgccatcctacagttacaactctgacccataattgtttctgtctgaaagaaata 680

                                                                 
Query: 481 cagggatggaaatagagaggaaccggaggaaaagaaggtccagagataggccca 534
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 cagggatggaaatagagaggaaccggaggaaaagaaggtccagagataggccca 734


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 534
Length of database: 934
Length adjustment: 10
Effective length of query: 524
Effective length of database: 924
Effective search space:   484176
Effective search space used:   484176
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)