BAC Information

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BAC

Clone NameMSMg01-495O05
Chromosome18 (Build37)
Map Location 71,543,823 - 71,544,181
singlet/doubletsinglet
Overlap geneDcc
Upstream gene4930503L19Rik, Stard6, Poli, Mbd2, EG668032
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-495O05.T7 (MSMg01no495_o05.b1)MSMg01-495O05.TJ (MSMg01no495_o05.g1)
ACCAG572825AG572826
length698720
length of high quality
(start - end)
360 (330 - 689)321 (329 - 649)
definitionCHROMAT_FILE: MSMg01no495_o05.b1 PHD_FILE: MSMg01no495_o05.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:21:02 2005CHROMAT_FILE: MSMg01no495_o05.g1 PHD_FILE: MSMg01no495_o05.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:21:03 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CAAGTTGAGAGGGTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCA
GNAAATGCGCGGAATTCTATAATTTCCATAAAAACATATAGGAAAAAACC
CTTCTAATTCGTCTGGAAGCCAAATGATTAACATATATTGTATACATATG
CATGCATATATTTGTGATAACCTTATGTATTCATTTTTAATATTTTGTCT
TTTGTTTTATTTTTAAAAATTTGATCCTTCTCCCCATAATCAAAGTACTG
ACTACCTTGTCACAAGCGGATTGATGCCAGGTGCTTACCTGTTATGGAAC
GAGTGGTGGCACTTTCGTATATAGTGATTCCTTCTCCGGCATTGTTGAAA
GCTTTTAAGGAGATTACATAATGAGAACTCGACTCTAGAGGAAAGCAGAA
ACAAGTTGGACATGTGAATTATTGAATTGAAATGCTCACAGTGAACATTT
CCTGAAAACAAATTGAATATAATCTTTTAAATAAATTGATGTTTGAAAAT
GATTGTGTTGGATTCTGGGAACCACCAGCTCTAATGGAGACAGGCTTTCG
ATCTTCCTGAATCTTCATTTGAGCATTAAATGCACAAGAGGGTGAAGAAC
TAAGAGCATTAGCCACTCTGTACAGGGTGTGTGATGATTGATGTTTGTCA
GCAAACCCTAAAATACAACTTTTTTTTTTTTTTTTTTTAGTTTCCAGC
NNNCCCCGATGAAGTGGGTAGTCTGGNGGNCGCCTGGATCAGACTAGGGG
TGAACTATAGAATTTTCCAAAAAAGGGCACCTGAGGAATACCAAATGGCT
GAGAAGCACCTGGAAAAATGTCCAGCATCCTTAATAATCAGGGAAATGCA
AATCAAAACAACCCTGAGATTCCACCTCACACCAGTCAGTCAGAATGGCT
AAGATCAAAAATTCAGGTGACAGCAGATGCTGGAGAGGATATGGAAAAAG
GTTAACACTCATCCATTGTTGGTGGGGTTGCAAGCTTGTACAACCACTCT
GGAAATCAATCTGGCATTTCCTCATATTATTGGACATAGTACTACCGGAG
GATCCAGAAATACCTCTCCTGGGCATATATCCAGAAGATGTTCCAACCGG
TAAGAAGGACACATGCTCCACCATGTTCATAGAACCCTTATTTATAATAG
CCAGAAGCTGGAAAGAACCCAGATGCCCCTCAACAGAGGAATGGATACAG
GAAATGTGGTACATTTACACAATGGAGTACTACTCAGCTATTAAAAAGAA
TAAATTTATGAAATTCCTAGGCAAATGGATGGACCTGGAGGGCGTCATCC
TAAGTGAGGTAACTCCATCACAAAAGAACTCATATGATATGTATTCACTG
ATTAGTGGATATTAGCCTAGAAACTTAGAATATCTAAGATACAAGATACA
ATTTGTGAAACACATGAAGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no495_o05.b1 MSMg01no495_o05.b1 CHROMAT_FILE:
MSMg01no495_o05.b1 PHD_FILE: MSMg01no495_o05.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:21:02 2005
         (360 letters)



>mm_chr18_71543623_71544382
          Length = 760

 Score =  687 bits (355), Expect = 0.0
 Identities = 358/359 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ccttctccggcattgttgaaagcttttaaggagattacataatgagaactcgactctaga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ccttctccggcattgttgaaagcttttaaggagattacataatgagaactcgactctaga 260

                                                                       
Query: 61  ggaaagcagaaacaagttggacatgtgaattattgaattgaaatgctcacagtgaacatt 120
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 261 ggaaagcagaaacaagttggacatgtgaattattgaattgaaatgctcacggtgaacatt 320

                                                                       
Query: 121 tcctgaaaacaaattgaatataatcttttaaataaattgatgtttgaaaatgattgtgtt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tcctgaaaacaaattgaatataatcttttaaataaattgatgtttgaaaatgattgtgtt 380

                                                                       
Query: 181 ggattctgggaaccaccagctctaatggagacaggctttcgatcttcctgaatcttcatt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ggattctgggaaccaccagctctaatggagacaggctttcgatcttcctgaatcttcatt 440

                                                                       
Query: 241 tgagcattaaatgcacaagagggtgaagaactaagagcattagccactctgtacagggtg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgagcattaaatgcacaagagggtgaagaactaagagcattagccactctgtacagggtg 500

                                                                      
Query: 301 tgtgatgattgatgtttgtcagcaaaccctaaaatacaacttttttttttttttttttt 359
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tgtgatgattgatgtttgtcagcaaaccctaaaatacaacttttttttttttttttttt 559


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 360
Length of database: 760
Length adjustment: 9
Effective length of query: 351
Effective length of database: 751
Effective search space:   263601
Effective search space used:   263601
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)