BAC Information

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BAC

Clone NameMSMg01-496A01
Chromosome18 (Build37)
Map Location 12,562,728 - 12,563,170
singlet/doubletsinglet
Overlap geneLama3
Upstream geneLOC665310, LOC100040148, Rbbp8, LOC621998, Cables1, 6030446N20Rik, Riok3, 3110002H16Rik, Npc1, Ankrd29
Downstream gene2810439F02Rik, Cabyr, LOC665356, Osbpl1a, LOC435556, Impact, Hrh4, EG383354, LOC665379
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-496A01.T7 (MSMg01no496_a01.b1)MSMg01-496A01.TJ (MSMg01no496_a01.g1)
ACCAG572913AG572914
length738729
length of high quality
(start - end)
629 (76 - 704)620 (78 - 697)
definitionCHROMAT_FILE: MSMg01no496_a01.b1 PHD_FILE: MSMg01no496_a01.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:21:11 2005CHROMAT_FILE: MSMg01no496_a01.g1 PHD_FILE: MSMg01no496_a01.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:21:11 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTTTTTACTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXCGCGGAATTCAACACTTTCCTGGTCTACAGATTGAGTTCCAGGATAGC
TGGGGGTTGCACAGAGAAACCTATGTCAACATAATAATAACAAACCAATC
AACCAAACAATCCAAGAGTCTGTTACCAATATACTGAATTGGACAAAGAA
TAGTAGTATGCCATGAAGAAACAACCAGATAATGTGAGAAGACAAACGAT
GAAGGATCTTTCTTAGGGGCGGAGTGATATTATTTTAATGTCTGAGAGGA
CTGGAAAGATGTCTCAGAGGTTGAGTTTTCCTGTTCTTCCAGATGACCTG
AGAGCAGTTCACAGCACAGGCATTTGACAGCTCACACCTGCCTGTAACTC
TAGCTCCAGGGAGACCCAGCAACCCTCTTCTGGCCTCTGGGGCACCTGTA
CTCATGTGCATATATGTCCACACAGGTACAAGCATACACATAATTAACAA
TAATAAAATAATATTGTTTAGACAGGGTCTTACCAGGTAGCTCTGGCTGA
CCTCAAATCTAACAATTAATAAAATAAAATATGATAGCTTTGTGCAGTGG
CAGTATTGTAGCCAATGAGGTTTATCCAAAGCGAGATTCTTGTTAATTGA
AAACTTTTTCCAAAATAAAATATGAACGAGTTAATTTCCTAAGGTCCATT
CAGAATTCTTGTGGTCTTGATTTCTCTGCACTGAGAGT
NAAGAACAATGAATTGGGTGGCCTGGCGGCCGCCTGATCAACAAAGGGAG
GTGAACTATAGAAGTGCTAAAAAAGTCTCAGGAGAAACAAGGGGTCTGGT
ACGCTGAGTGACCACACAGGCATATCTCAGCTGCTGATGCACACTAGGTG
GTGACAACAACCCTTGATTTTTCTTCAGCCTCTGACATTTGGGGGCTGTC
GATTACAGCAAGAGTTAGCCCATGTGCACTAATACCAGACTCACTATAAC
CATATATTGGATATAACATTGTTTCTTTTCTTTGAGATTGAACCCAGGTT
TCTGCTACTGAGCTAGATTTATTTTTAAGTCGCCCAGGCTGGCCTCAGAC
AGACTCACTTTGCAGGCTAATCAGGCCTTGTGTTTTCAATCCTTCTGCAT
CTGCTTCTTTAGCTGCTGGGATTACAGGCCTACACTACCAGGCCTGGTTG
ATTTTTCTGCAAATAGCTAATATCTATTTTAGACAGGAACCACCCCTCTG
CCTAAGTAGCACTGGCTGGGAAAGGTATTTGGAAGAATTTAACTTATTTG
GCAAGCAAAACAAGCAACAAAATTAAGACGCTTAAGACTCACCCGGCGCG
TGACAGTGGGGTCTCGCTCTGCCTTGGAAATAAGATGCCCAAGGAGGGTG
TTGGTTCGCAGAAACCGCAAGCGGATGTTTGTTGCCTTAGTAAACTCCCT
CAGAGTGTCAGAGAAAGCATACTTTTTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no496_a01.g1 MSMg01no496_a01.g1 CHROMAT_FILE:
MSMg01no496_a01.g1 PHD_FILE: MSMg01no496_a01.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:21:11 2005
         (620 letters)



>mm_chr18_12562728_12563748
          Length = 1021

 Score =  741 bits (383), Expect = 0.0
 Identities = 428/449 (95%), Gaps = 13/449 (2%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcaggagaaacaaggggtctggtacgctgagtgaccacacaggcata---tctcagctgc 57
           ||||||||||||||||||||||||||||||||||||||||||||  |   ||||||||||
Sbjct: 443 tcaggagaaacaaggggtctggtacgctgagtgaccacacaggc--agggtctcagctgc 386

                                                                       
Query: 58  tgatgcacactaggtggtgacaacaacccttgatttttcttcagcctctgacatttgggg 117
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tgatgcacactaggtggtgacaacaacccttgatttttcttcagcctctgacatttgggg 326

                                                                       
Query: 118 gctgtcgattacagcaagagttagcccatgtgcactaataccagactcactataaccata 177
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 325 gctgtcgattacagcaagagttagcccacgtgcactaataccagactcactataaccata 266

                                                                       
Query: 178 tattggatataacattgtttcttttctttgagattgaacccaggtttctgctactgagct 237
           |||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 265 tattggatataacagtgtttcttttctttgagattgaacccaggtttctgttactgagct 206

                                                                       
Query: 238 agattta----tttttaagtcgcccaggctggcctcagacagactcactttgcaggctaa 293
           ||||| |    |    ||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 205 agattaacagct----aagtcgcccaggctggcctcagatagactcactttgcaggctaa 150

                                                                       
Query: 294 tcaggccttgtgttttcaatccttctgcatctgcttctttagctgctgggattacaggcc 353
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 149 tcaggccttgtgttttcaatccttctgtatctgcttctttagctgctgggattacaggcc 90

                                                                       
Query: 354 tacactaccaggcctggttgatttttctgcaaatagctaatatctattttagacaggaac 413
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 89  tacaccaccaggcctggttgatttttctgcaaatagctaatatctattttagacaggaac 30

                                        
Query: 414 cacccctctgcctaagtagcactggctgg 442
           |||||||||||||||||||||||| ||||
Sbjct: 29  cacccctctgcctaagtagcactgactgg 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 620
Length of database: 1021
Length adjustment: 10
Effective length of query: 610
Effective length of database: 1011
Effective search space:   616710
Effective search space used:   616710
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)