Query= MSMg01no496_e20.b1 MSMg01no496_e20.b1 CHROMAT_FILE:
MSMg01no496_e20.b1 PHD_FILE: MSMg01no496_e20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:21:35 2005
(609 letters)
>mm_chr18_45962938_45963948
Length = 1011
Score = 1046 bits (541), Expect = 0.0
Identities = 590/607 (97%), Gaps = 2/607 (0%)
Strand = Plus / Plus
Query: 5 gaattctcttattcgcatgatggcaggatattaaatcttgtagatgatactcaaaaggag 64
||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 205 gaattctcttagacgcatgatggcaggatattaaatcttgtagatgatacccaaaaggag 264
Query: 65 aaaagcccttctagattaagagatattgataaaggtaacagggctgatagttattgtgag 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 aaaagcccttctagattaagagatattgataaaggtaacagggctgatagttattgtgag 324
Query: 125 ttgagaattcaagcagcagagctagagagagggatagaaggctcgcaacgcgttagttct 184
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 325 ttgagaattcaagcagcagagctcgagagagggatagaaggctcgcaacgcgttagttct 384
Query: 185 ggaagctgtgtccggggagctgtgtgggaacaccctgcttacttattctacttcattgtc 244
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 385 ggaagctgcgtccggggagctgtgtgggaacaccctgcttacttattctacttcattgcc 444
Query: 245 agcttctgtttcctgccatgccccagaaggtggcaaatgccagcccaaggcttgccgctg 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 agcttctgtttcctgccatgccccagaaggtggcaaatgccagcccaaggcttgccgctg 504
Query: 305 aggaagatcatcacctcgctgctttgcagtgtttttaaatgattttt--ccaggatctgg 362
||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 505 aggaagatcttcacctcgctgctttgcagtgtttttaaatgatttttttccaggatctgg 564
Query: 363 gggcgggggcagggagtattcaatttttcaaagccttccagagaaagtctttcagaactg 422
||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 gggtgggggcggggagtattcaatttttcaaagccttccagagaaagtctttcagaactg 624
Query: 423 aatattttatcaaaaaggaaggaaaggggaaagaaaattcagacaaggcacatctaccag 482
||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||
Sbjct: 625 aatattttatcaaaaaggaaggaaaggggaaagaaaattcaaacaaggcacatataccag 684
Query: 483 gagggtagctttgaaaaacttaaatgatattatatccctgcaaactaggaaatgaccaaa 542
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 aagggtagctttgaaaaacctaaatgatattatatccctgcaaactaggaaatgaccaaa 744
Query: 543 ctcccttttctctacccactatatctcatctttgttctgttttgctatcttaaccgcatt 602
||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 745 ctcccttttctctactcactatttctcatctttgttctgttttgctatcttaaccgcatt 804
Query: 603 tggatca 609
|||||||
Sbjct: 805 tggatca 811
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 609
Length of database: 1011
Length adjustment: 10
Effective length of query: 599
Effective length of database: 1001
Effective search space: 599599
Effective search space used: 599599
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no496_e20.g1 MSMg01no496_e20.g1 CHROMAT_FILE:
MSMg01no496_e20.g1 PHD_FILE: MSMg01no496_e20.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:21:35 2005
(533 letters)
>mm_chr18_46154361_46155288
Length = 928
Score = 845 bits (437), Expect = 0.0
Identities = 511/547 (93%), Gaps = 21/547 (3%)
Strand = Plus / Minus
Query: 1 aaacgaacacatccttgttaagaaagacccctgtttctgctggcagtggagtggaaagca 60
|||||||||||||||||||||||||||||||||||| |||||||| ||||||||||| |
Sbjct: 578 aaacgaacacatccttgttaagaaagacccctgtttttgctggca--ggagtggaaagta 521
Query: 61 gggagtaaacttgccatttaaaggttgacatttctttctatgcaaaatagcctgtaatac 120
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 520 gggagtaaacttgccatttaaaggttgacatttctttctatgcaaaatagcctgtaatag 461
Query: 121 gttagactcagtctctctgggacactgatctgccttttagagtgcttctccatgcagcca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 460 gttagactcagtctctctgggacactgatctgccttttagagtgcttctccatgcagcca 401
Query: 181 gagagagagagaaaaaaaaagtgcaaagcccaacatttctcacttctataaaagttcctt 240
||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 400 gagagagagag---aaaaaagtgcaaagcccaacatttctcacttccataaaagttcctt 344
Query: 241 ctggtccagaaatgctgcctgaccaaactgcaagctagactgtctctgaacctgttctta 300
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 343 ctggtccagaaatgctgcctgaccaaactgcaagctagagtgtctctgaacctgttctta 284
Query: 301 ttctgagtagtgccctattgggcctcagccactctctgctaagcttgccagggttttcat 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 283 ttctgagtagtgccctattgggcctcagccactctctgctaagcttgccagggttttcat 224
Query: 361 ttttgttttatttatatctagtttgtgtgtgtgtgtgtgtgtgtgtgtgtg--------- 411
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 223 ttttgttttatttatatctagtttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt 164
Query: 412 -----agagagagagagagagagagagagacngagagagagagagagagagacagagaga 466
|||||||||||||||||||||||||| ||| ||| ||| ||| ||||||| |||
Sbjct: 163 gtgaaagagagagagagagagagagagagac--agacagacagacagacagacagacaga 106
Query: 467 gagagagagacagagagagagagagagagagagacagagagagagacagagagactgtgc 526
||||| ||||||||||| ||||||||| ||||||||||| |||||||||||||||||||
Sbjct: 105 cagagacagacagagagacagagagagacagagacagagacagagacagagagactgtgc 46
Query: 527 atgtgaa 533
|||||||
Sbjct: 45 atgtgaa 39
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 86
Number of extensions: 9
Number of successful extensions: 9
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 533
Length of database: 928
Length adjustment: 10
Effective length of query: 523
Effective length of database: 918
Effective search space: 480114
Effective search space used: 480114
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
