TTTTNTTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXCGCGGAATTCCTGGATCGAATTTATGCCTGTAAAGGCTAACTTACTAG
ATAGATATTCAATAATGTGAGGTGTTAGAATATTGCAGATTCAGAGCCTA
ATTACAATTTATCTTGGATTATCATTAGCACCCTAGTGTCACACAGAGGT
GTCCGACAGCTCTGTGTCGGACTTGATATCCTGTGACTGACAGATAAAAA
TCCTTTAGAGTGCATGAACAGACCCCAAGTTTCTACCAATCCAAGGTCTA
AGAATGCTGTCATTGACTGAGGCTTTTATCACTTTTTCCTGATTTGTTGC
AAGATGCCTACCCAAGGTACCCACTGATGTGTTTGAAAAGTATTTTAACT
TATTCCACCTTTGTTTTGTTATTAGGAAAAGCTTGCGAAAGGTCTGGAGA
GATGGCTTAGCAAGTAAGAGCACTTGCTGCTCTTCCAGAGGTGTTAGAGT
TATTCCAAAGTTCAATTCCAAATATCCACATGGTTCAGGGGACCTGATGC
CTTTTTCTGGCCACCTAAGACATTGCATGCATGTGGTATACATGCAGGCA
AAGCACTCATACACATAAAAATTTTATTAAAAAAGTTCACGAGTTTGCTG
CTTCATTGGAACATGTTATTTGAGGTAACCTAAATCTGTGATTTTGGGTC
ATGGACACTCATATTTGGCTTCAGAATAAACCATATTTTGTTATTCCTTT
GAAGTCAGAAATCATTGACCACT

NAATTTTCGATGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATAGTTACAGTCGTCACAG
GACAGTGGATATTTTGGCAGCCTCTTGGAGGTGGTAGGAATAAAGACTGG
CTTGAGGAATAAAGAACTTTGGCTTAAGTATTTAGCTGCCTCCTGAATTT
GGAAAGCCTCATTAGGGTTGGCTTCTTTTAGTTAGCCTTTACTTCTCCAG
TTACAACCTGTAAGTGAAATTCTAGTTGTTCAAGAACCAAGTTGTGCATG
GGAATAAAGTGTTAATAACGAAGTTGCTCCTGGAAAAAATTAGCAGGTTT
CAGACTGTGCCTAATAGGAGAGAAAAACTATTACTACATGTGGGTGTTTG
CTTATTCTACTCTGATCTTTCTTCTCCAAGATGAACGTTTAGGAGCCATG
ATGGATTGTATGAAATGACTCACAGATGTTGGAGGAATTTCCATAGCACT
TCACTCGTGACATTTGGGACACACATGCCTAAAATATAAGAGTTTGTTTG
AAATTTTGCTCTTAAAAATGGGGGCGGGGGAAATTGGTGAAATCAGCACT
ATATGTAAATACATGTGTTGAGTTTGGCTTTAGGAGTCTTGAGTGTGTTT
TCTTTAGCATTTTGTTTAAGGGGGATTTTCACAGNTATTATTTATTTTTA
ATTATGTGCACGTGAGTGCATCTATGGACATGTACCCATTATCACAGGTA
CCCAAGGAGGTCCCAAGAA

Query= MSMg01no496_m24.g1 MSMg01no496_m24.g1 CHROMAT_FILE:
MSMg01no496_m24.g1 PHD_FILE: MSMg01no496_m24.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:22:16 2005
         (543 letters)



>mm_chr18_55102472_55103414
          Length = 943

 Score = 1019 bits (527), Expect = 0.0
 Identities = 539/543 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   atagttacagtcgtcacaggacagtggatattttggcagcctcttggaggtggtaggaat 60
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 743 atagttacagtcgtcacaggacagtgggtattttggcagcctcttggaggtggtaggaat 684

                                                                       
Query: 61  aaagactggcttgaggaataaagaactttggcttaagtatttagctgcctcctgaatttg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 aaagactggcttgaggaataaagaactttggcttaagtatttagctgcctcctgaatttg 624

                                                                       
Query: 121 gaaagcctcattagggttggcttcttttagttagcctttacttctccagttacaacctgt 180
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 623 gaaagcctcattagggttggcttcttttcgttagcctttacttctccagttacaacctgt 564

                                                                       
Query: 181 aagtgaaattctagttgttcaagaaccaagttgtgcatgggaataaagtgttaataacga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 aagtgaaattctagttgttcaagaaccaagttgtgcatgggaataaagtgttaataacga 504

                                                                       
Query: 241 agttgctcctggaaaaaattagcaggtttcagactgtgcctaataggagagaaaaactat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 agttgctcctggaaaaaattagcaggtttcagactgtgcctaataggagagaaaaactat 444

                                                                       
Query: 301 tactacatgtgggtgtttgcttattctactctgatctttcttctccaagatgaacgttta 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 tactacatgtgggtgtttgcttattctactctgatctttcttctccaagatgaacgttta 384

                                                                       
Query: 361 ggagccatgatggattgtatgaaatgactcacagatgttggaggaatttccatagcactt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 383 ggagccatgatggattgtatgaaatgactcacagatgttggaggaatttccatagcattt 324

                                                                       
Query: 421 cactcgtgacatttgggacacacatgcctaaaatataagagtttgtttgaaattttgctc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 cactcgtgacatttgggacacacatgcctaaaatataagagtttgtttgaaattttgctc 264

                                                                       
Query: 481 ttaaaaatgggggcgggggaaattggtgaaatcagcactatatgtaaatacatgtgttga 540
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 ttaaaaatgggggggggggaaattggtgaaatcagcactatatgtaaatacatgtgttga 204

              
Query: 541 gtt 543
           |||
Sbjct: 203 gtt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 543
Length of database: 943
Length adjustment: 10
Effective length of query: 533
Effective length of database: 933
Effective search space:   497289
Effective search space used:   497289
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)