BAC Information

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BAC

Clone NameMSMg01-497F05
Chromosome18 (Build37)
Map Location 29,251,778 - 29,252,330
singlet/doubletsinglet
Overlap genenone
Upstream geneEG271505, EG625997, BC051408
Downstream geneLOC100040930, 4930578E11Rik, LOC666073
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-497F05.T7 (MSMg01no497_f05.b1)MSMg01-497F05.TJ (MSMg01no497_f05.g1)
ACCAG573921AG573922
length753755
length of high quality
(start - end)
629 (51 - 679)556 (79 - 634)
definitionCHROMAT_FILE: MSMg01no497_f05.b1 PHD_FILE: MSMg01no497_f05.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:22:58 2005CHROMAT_FILE: MSMg01no497_f05.g1 PHD_FILE: MSMg01no497_f05.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:22:58 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNNCCTCTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCCTGATCTTTCCAAAACTTTTATCATGAATGGGTGTTGGAT
CTTGTCAAATGCTTTTTCTGCATCTAACGAGATGATCATGTGGTTTTTGT
CTTTGAGTTTGTTTATATAATGGATTACATTGATGGATTTTCGTATATTA
AACCATCCCTGCATCCCTGGAATAAAACCTACTTGGTCAGGATGGATGAT
TGCTTTAATGTGTTCTTGGATTCGGTTAGCGAGAATTTTATTGAGGATTT
TTGCATCGATATTCATAAGAGAAATTGGTCTGAAGTTCTCTATCTTTGTT
GGGTCTTTCTGTGGTTTAGGTATCAGAGTAATAGTGGCTTCATAAAATGA
GTTGGATAGAGTACCTTCTACTTCTATTTTGTGAAATAGTTTGTGCAGAA
CTGGAATTAGATCTTCTTTGAAGGTCTGATAGAACTCTGCACTAAACCCA
TCTGGTCCTGGGCTTTTTTTGGTTGGGAGACTATTAATAACTGCTTCTAT
TTCTTTAGGTGATATGGGACTGTTTAGATGATCAACTTGATCCTGATTCA
ACTTTGGTACCTGGTATCTGTCCAGAAATTTGTCCATTTCGTCCAGGTTT
TCCAGTTTTGTTGAGTATAGCCTTTTGTAGAAGGATCTGATGGTGTTTTG
GATTTCTTCAGGATCTGTTGTTATGTCTCCCTTTTCATTTCTGATTTTGT
TAA
NNNTTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXCTTGAGGGAAGTGGGATTCATT
GAAGAGACTATACTAGTAACGCAGGCTGGTCTGGAACTCACACTTCTATG
TTGACTTTCCAAGTGATGGGATTCCAGTTGTATGGCACCATGCCCAGGTG
GGGCTTCCTCTTGGGCACAGAATCATCCTTTTCTGCAATAGCGCTAGCAC
GTGCACGCCATCCAAAGTAATAAACAAATTCAAGCCAATGTTACTTGTGT
GTTCCAGTTTACTGTTGATGATATGTAATAAAGGAAATCCAAAGTCAGGA
GTGAATGAAACAACATAAGAACTAACTGTGCCCATCTTGGTCTCAGTCAC
AAAATCCTGAGTAATGACGTGTATCCTGTTAAGGTACTGTCATCTCAAAA
GATGACATAATAATCAAATACAAACCAGAGGAAGTCAGATTATAGAAAGA
TCCTCAAGAAAGAGAGAGAGAGCTACCCTTAGGAAGATCATGTCTAGAGA
GAAGATCCACAGTGGAAGGGATGTCAGGCAGGGAGCTCTGCACCACACAC
ACTGCTAAGCCATCTGACTGTGTGCTGATTAGAGAGAAGATCCACAGTGG
AAGGGATGTCAGGCAGGGAGCTCTGCACTACACACACTGCTAAGCCATCT
GACTGTGTGCTGATTAGACTTTTGTGTTTGATTACTGTTTTAAAACAGAA
GCTGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no497_f05.g1 MSMg01no497_f05.g1 CHROMAT_FILE:
MSMg01no497_f05.g1 PHD_FILE: MSMg01no497_f05.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:22:58 2005
         (556 letters)



>mm_chr18_29251578_29252533
          Length = 956

 Score = 1023 bits (529), Expect = 0.0
 Identities = 547/553 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   cttgagggaagtgggattcattgaagagactatactagtaacgcaggctggtctggaact 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cttgagggaagtgggattcattgaagagactatactagtaacgcaggctggtctggaact 260

                                                                       
Query: 61  cacacttctatgttgactttccaagtgatgggattccagttgtatggcaccatgcccagg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cacacttctatgttgactttccaagtgatgggattccagttgtatggcaccatgcccagg 320

                                                                       
Query: 121 tggggcttcctcttgggcacagaatcatccttttctgcaatagcgctagcacgtgcacgc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 321 tggggcttcctcttgggcacagaatcatccttttctgcaatagcgctagcatgtgcacgc 380

                                                                       
Query: 181 catccaaagtaataaacaaattcaagccaatgttacttgtgtgttccagtttactgttga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 catccaaagtaataaacaaattcaagccaatgttacttgtgtgttccagtttactgttga 440

                                                                       
Query: 241 tgatatgtaataaaggaaatccaaagtcaggagtgaatgaaacaacataagaactaactg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgatatgtaataaaggaaatccaaagtcaggagtgaatgaaacaacataagaactaactg 500

                                                                       
Query: 301 tgcccatcttggtctcagtcacaaaatcctgagtaatgacgtgtatcctgttaaggtact 360
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 501 tgcccatcttggtctcagtcacaaactcctgagtaatgacgtgtatcctgttaaggtact 560

                                                                       
Query: 361 gtcatctcaaaagatgacataataatcaaatacaaaccagaggaagtcagattatagaaa 420
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 561 gtcatctcaaaagatgacataataatcaaatacaaaccagagtaagtcagattatagaaa 620

                                                                       
Query: 421 gatcctcaagaaagagagagagagctacccttaggaagatcatgtctagagagaagatcc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gatcctcaagaaagagagagagagctacccttaggaagatcatgtctagagagaagatcc 680

                                                                       
Query: 481 acagtggaagggatgtcaggcagggagctctgcaccacacacactgctaagccatctgac 540
           ||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||
Sbjct: 681 acagtggaagggatgtcaggcagggagctctgcaccacacatactactaagccatctgac 740

                        
Query: 541 tgtgtgctgatta 553
           | |||||||||||
Sbjct: 741 tatgtgctgatta 753


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 556
Length of database: 956
Length adjustment: 10
Effective length of query: 546
Effective length of database: 946
Effective search space:   516516
Effective search space used:   516516
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)