Query= MSMg01no498_f02.b1 MSMg01no498_f02.b1 CHROMAT_FILE:
MSMg01no498_f02.b1 PHD_FILE: MSMg01no498_f02.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:24:17 2005
(614 letters)
>mm_chr18_40103655_40104668
Length = 1014
Score = 1112 bits (575), Expect = 0.0
Identities = 602/611 (98%), Gaps = 1/611 (0%)
Strand = Plus / Plus
Query: 5 gaattccaagccttacctgctgccaaagatggactgatgtcaggatcacaagtgctgagc 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccaagccttacctgctgccaaagatggactgatgtcaggatcacaagtgctgagc 264
Query: 65 cccattcttcctgtaagttcggcctctggtgtcaatcactatctagaattctcaaagggt 124
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 265 cccattcttcctgtaagttcagcctctggtgtcaatcactatctagaattctcaaagggt 324
Query: 125 ctgctcatcttcctcttcttcaataaatctcttacacaagaactcccatctaaggctctg 184
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ctgctcatctccctcttcttcaataaatctcttacacaagaactcccatctaaggctctg 384
Query: 185 cttatagtgaatttgacagagt-tacttgaccttatctgtgaaatggagctgcttaagga 243
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 385 cttatagtgaatttgacagagtatacttgaccttatctgtgaaatggagctgcttaagga 444
Query: 244 tttcatgtgaaatttatgaacaaacaacaagatgaagtaaataaataaaatttgataggt 303
|||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tttcatattaaatttatgaacaaacaacaagatgaagtaaataaataaaatttgataggt 504
Query: 304 attagtaaaagaaaaccacacaaagctgtttattgtatggtaggcaactactctaggggt 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 attagtaaaagaaaaccacacaaagctgtttattgtatggtaggcaactactctaggggt 564
Query: 364 gaagcaaggcaagtgacttgcatatctcctttctcacagaccacataggttactggtact 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 gaagcaaggcaagtgacttgcatatctcctttctcacagaccacataggttactggtact 624
Query: 424 ctacgggagggctgggctagcctacggacaccccacaagccctctgtaatctttctttta 483
|||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 625 ctaccagagggctgggctagcctatggacaccccacaagccctctgtaatctttctttta 684
Query: 484 tctctttcgttcatttctgctcatcattaccaggcctgaaactgacattcaagataaccc 543
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 tctctttcattcatttctgctcatcattaccaggcctgaaactgacattcaagataaccc 744
Query: 544 aaaggctccctccagtctactggttttttggaatctaaatagtaataaatttttactgta 603
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 aaaggctccctccagtctactggttttttggaatctaaatagtaataaatttttactgta 804
Query: 604 ttgaaagaccc 614
|||||||||||
Sbjct: 805 ttgaaagaccc 815
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 614
Length of database: 1014
Length adjustment: 10
Effective length of query: 604
Effective length of database: 1004
Effective search space: 606416
Effective search space used: 606416
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no498_f02.g1 MSMg01no498_f02.g1 CHROMAT_FILE:
MSMg01no498_f02.g1 PHD_FILE: MSMg01no498_f02.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:24:17 2005
(625 letters)
>mm_chr18_40251403_40252427
Length = 1025
Score = 1185 bits (613), Expect = 0.0
Identities = 622/625 (99%)
Strand = Plus / Minus
Query: 1 tctctggagaaattatcaactactcaggaaatggatgttttttagactaataaaattgat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1015 tctctggagaaattatcaactactcaggaaatggatgttttttagactaataaaattgat 956
Query: 61 gctgattgggaatgggccaagaaggaacaaatatgagggcatcctcactcctcactaaga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 955 gctgattgggaatgggccaagaaggaacaaatatgagggcatcctcactcctcactaaga 896
Query: 121 gtcatcactatgtatcctaagttattgatatttaatataaaaaggagacatttcatcatc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 895 gtcatcactatgtatcctaagttattgatatttaatataaaaaggagacatttcatcatc 836
Query: 181 atgataaataactgttaaaagagagacagagagaaagaagaggaagaagagggagaagga 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 835 atgataaataactgttaaaagagagacagagagaaagaagaggaagaagagggagaagga 776
Query: 241 aagagaggaaggaaaactatatttcaaaaattattaaatattattattaaaatgcattag 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 775 aagagaggaaggaaaactatatttcaaaaattattaaatattattattaaaatgcattag 716
Query: 301 ctgagagatgtatactatgaacaaaggctaaaacctcagttttatttattttctatagga 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 715 ctgagagatgtatactatgaacaaaggctaaaacctcagttttatttattttctatagga 656
Query: 361 aagtctatttggctaaggaaacaggagcagaacacatgatatagtacctgttaatattaa 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 655 aagtctatttggctaaggaaacaggagcagaacacatgatatagtacctgttaatattaa 596
Query: 421 cacatctttctttatgataaactactttggtgttctggtgcacttgccttatgtacaaaa 480
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 595 cacatccttctttatgataaactactttggtgttctggtgcacttgccttatgtacaaaa 536
Query: 481 ccaataggaagctgatacaactaaacatgctacaaatgaaagagtagaagacatgaactg 540
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 535 ccaacaggaagctgatacaactaaacatgctacaaatgaaagagtagaagacatgaactg 476
Query: 541 taaagtcagacaagcctagatctcatcaagatgctctaattacgagctgagtaaccttag 600
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 475 taaagtcagacaagcctagatctcatccagatgctctaattacgagctgagtaaccttag 416
Query: 601 atgcatgaataacctctcacagcct 625
|||||||||||||||||||||||||
Sbjct: 415 atgcatgaataacctctcacagcct 391
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 625
Length of database: 1025
Length adjustment: 10
Effective length of query: 615
Effective length of database: 1015
Effective search space: 624225
Effective search space used: 624225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
