Query= MSMg01no499_b21.b1 MSMg01no499_b21.b1 CHROMAT_FILE:
MSMg01no499_b21.b1 PHD_FILE: MSMg01no499_b21.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:25:25 2005
(645 letters)
>mm_chr18_62660246_62661291
Length = 1046
Score = 1129 bits (584), Expect = 0.0
Identities = 626/640 (97%), Gaps = 1/640 (0%)
Strand = Plus / Minus
Query: 7 gaattc-aattgccttccgtagggcaatgctgatggttggcagtattcagggctcatcca 65
|||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 846 gaattcaaattgccttccgtagggcaatgctgccggttggcagtattcagggctcatcca 787
Query: 66 tttgcctctcagtctgctgttagctattcagtaacctcaggctctgaatcccagggatcc 125
||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||
Sbjct: 786 tttgcctctcagtctgctgctagctattcagtaacctcaggctctgagtcccagggatcc 727
Query: 126 tgaaagatcactgcacgggccttcctgcagctctgtcatgggccagaataccaccaacac 185
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 726 tgagagatcactgcacgggccttcctgcagctctgtcatgggccagaataccaccaacac 667
Query: 186 tgaattatggaaacgacacgcaggagaaaagagggcaagtgaacggcagaacttggacca 245
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 666 tgaattatggaaacgacacgcaggagaaaagagggcaagtgaacggcagaacttggacca 607
Query: 246 gaacaggtacaggtctgggtcccaaggttatcaatgtgggggagaaagttcttaggccat 305
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 606 gaacagttacaggtctgggtcccaaggttatcaatgtgggggagaaagttcttaggccat 547
Query: 306 tcgagcaaagagcttgccccctgctgtctcctagcacagcctaatacttgaatgtggaga 365
||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 546 gcgagcaaagagcttgtcccctactgtctcctagcacagcctaatacttgaatgtggaga 487
Query: 366 gcatgcgtcctaccattgaccaccattgagagtgctttagtatgtggcactttagaatcg 425
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 486 gcatgcgtcctaccattgaccaccattgagagtgctttagtatgtggcactttagaatcg 427
Query: 426 gaaggcctgggtctacattccacatccatacttgtcaggtctggcgcaacatatctctgc 485
||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 426 gaaggcctgggcctacattccacatccatacttgtcaggtctggcacaacatatctctgc 367
Query: 486 tgaggtttgctcattttcagggatggagccattttggtattttgtaggaaaggtttttat 545
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 366 tgaggtttgctcattttcagggatggagccattttggtactttgtaggaaaggtttttat 307
Query: 546 gaggaaacccatggaaagtgctaaccaaatgcttgacagaaagaagcatattagatgtca 605
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 gaggaaacccatggaaagtgctaaccaaatgcttgacagaaagaagcatattagatgtca 247
Query: 606 gcttctcttactgttctcttattactattcattaagttca 645
||||||||||||| ||||||||||||||||||||||||||
Sbjct: 246 gcttctcttactgctctcttattactattcattaagttca 207
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 645
Length of database: 1046
Length adjustment: 10
Effective length of query: 635
Effective length of database: 1036
Effective search space: 657860
Effective search space used: 657860
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no499_b21.g1 MSMg01no499_b21.g1 CHROMAT_FILE:
MSMg01no499_b21.g1 PHD_FILE: MSMg01no499_b21.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:25:25 2005
(616 letters)
>mm_chr18_62534274_62535289
Length = 1016
Score = 1031 bits (533), Expect = 0.0
Identities = 598/627 (95%), Gaps = 15/627 (2%)
Strand = Plus / Plus
Query: 1 aattccttgtgtcccaaggcaagtctggttcaccactttcctctgctccttctgaatgca 60
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 194 aattccttgtgtcccaaggcaagtctggttcaccactttcctctg---cttctgaatgca 250
Query: 61 ctttggtaggttggtgctgacatactttctatattttgcattctgtgaaattcaagataa 120
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 251 ctttggtagcttggtgctgacatactttctatattttgcattctgtgaaattcaagataa 310
Query: 121 cattgtttcaggattcattcatttcatccacttagcctcaaaaaataa----------aa 170
|||||||||||||||||||| ||||||||||||||||||||||||||| ||
Sbjct: 311 cattgtttcaggattcattcgtttcatccacttagcctcaaaaaataaaataaaatataa 370
Query: 171 taaaatataataaataaaatctgccaaacatggctcacaaatattcatcaaattttgtct 230
||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||
Sbjct: 371 taaaatataataaataaaacctgccaagcatggctcacaaatattcatcaaattttgtct 430
Query: 231 caggagcctagaattttagggctaatagaattacacagcattcagttgacaaatatcagg 290
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 431 caggagcctagaattttagggctaatagaattacacagcattcagttgacaaatatcagg 490
Query: 291 tgccagctctggctccgagaattcctgtggcctg-aggaatacagcaacaaacaaggcag 349
|||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||
Sbjct: 491 tgccagctctggctccgagaattcctgtggcctgcag-aatacagcaacaaacaaggcag 549
Query: 350 gaaggtcttttgtcctcctgaagagtagcaacaattatgtgagactataaagcataatct 409
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 550 gaaggtcttctgtcctcctgaagagtagcaacaattatgtgagactataaagcataatct 609
Query: 410 agtagcttgtatgaactatgaaggaggaggggtcagcagaaaaataaagatgaaggacaa 469
|||||||||||||||||| ||||||||||||| ||||||||||| |||||||||||||||
Sbjct: 610 agtagcttgtatgaactacgaaggaggagggggcagcagaaaaacaaagatgaaggacaa 669
Query: 470 tcatgactgttcagtgcaaaactcagtagcctgaaagaggattgcccagccgaaggaata 529
|||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 670 tcatgactgtccagtgcaaaactcagtagcctgaaacaggattgcccagccgaaggaata 729
Query: 530 aaatcaaggtcacactctgaggaccatagctgggtgacagtgggtataagaaatgagggg 589
|||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||
Sbjct: 730 aaatcaaggtcacactctgaggaccatagctgggtgacagcgggtatatgaaatgagggg 789
Query: 590 aacatggggatcggcctctgaactcag 616
||||||| |||||||||| ||||||||
Sbjct: 790 aacatggagatcggcctccgaactcag 816
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 616
Length of database: 1016
Length adjustment: 10
Effective length of query: 606
Effective length of database: 1006
Effective search space: 609636
Effective search space used: 609636
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
