BAC Information

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BAC

Clone NameMSMg01-499J02
Chromosome18 (Build37)
Map Location 75,176,835 - 75,177,414
singlet/doubletsinglet
Overlap genenone
Upstream geneMapk4, 2810433K01Rik, Cxxc1, EG435570, Mbd1, Ccdc11, LOC628298, LOC668124, LOC668126, Myo5b, Acaa2, LOC672799, Lipg, Rpl17, BC031181
Downstream geneDym, LOC628356, EG667777, Smad7, Gm672, Zbtb7c
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-499J02.T7 (MSMg01no499_j02.b1)MSMg01-499J02.TJ (MSMg01no499_j02.g1)
ACCAG575619AG575620
length691737
length of high quality
(start - end)
437 (23 - 459)593 (55 - 647)
definitionCHROMAT_FILE: MSMg01no499_j02.b1 PHD_FILE: MSMg01no499_j02.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:25:58 2005CHROMAT_FILE: MSMg01no499_j02.g1 PHD_FILE: MSMg01no499_j02.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:25:59 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ACTCACTATAGGTCGNAAATCCGCGGAATTCATAGAGATATTCCTGCCTT
TGCCTTCCAAGTGCTGGGACTAAAGGTGTGTGCCAGTACCACCTAGCAAT
TTCTGATCTTTTTTTTTTTTTTTTTTTTTTTTGCCACCCCGTGCACTTTA
TTGAATCCACTGTGGACAGATAGGTGAAGGTAACATTTGCATACTCGTAG
GGTAAAGGGTCGAGGCTTGAGCCTGGGGGCGGGGCGGGGGAGATGTGGAC
CGTGGAGCACAGGGCAGCTAGAATCCAGAATGGGGTGTTCTTTGTGCAAA
AGATTGAAAGACTACCACAGAGGTGGTAGAGAAAATAATGATGCAGATAA
TGACCATAAGGATGCTGAAGATCAGGGAGCTGATATTCAGGCACTTGGCA
GTGGAGGCGTAAGCCTGGGCTCCAACCACATCGCCCACCATCTTCCTGTC
CCTAGACTTCACAGAGTAGGCATAGGCAACGAAGCCCAGGCAGCAGGCGT
TGAAGAAGAGTGTATTGAACAGGGACCAGACCACATGGTCAGGCACAGAC
ACCTCTCTGGGCATGTTGATCACGGTGGTCCTCACAACAGCTGAGTTGCT
GGGTTCCCCCAGCTCAGTCACCCCGTACTCCTCTTTGATTGTCTCATAAC
TTGGAGGAAGGCCGGCATTGGTGGACAAGAAGGCTTGAGAA
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXTTGATCCTTCTGACTCCATGTCTTAGTTAGAATTTTACTGCTGTGA
ACAGACACCATGACCAAGGCAACTCTTATAAAGGACAACATTTAATTGGG
CCTGGCTTATAGGTTCAGAGGTTCAGTCCATTATCCTCAAGGCAGGAACA
TGGCAGTGTCCAGGCAGGCATGGTGCAGGATTTGCTGAGGGTTCTACATC
TTCATCTGAAGGCTTGTAGCAGAATACTCACTACCAAACAGCTAGGTTGA
AAGTATTTTATACCCATCCCCACAGTGACACAGGTACTCTAACAAGGCCG
CATCTCTTAATAGTGCCACTCCCTGGGCCAAGCATATACAAACCAACACA
CTCCACTTCCCAACTGTTAGGCTTATGGGTGTGAATCATGATATCTACCT
TCACAAACCAGTTTTCACCTAAGTAGGCCTCTGTACCATCCTTTACAGTG
ACTGGCCCTTGTAAAGCGCCTTTCCTATTTTCAGCTAGCTCCCCAAGCAC
CTTGTGTTTTAGTATGATTTGTTGTTCTGCTGCAAGCTCAGTGAATTTAC
TGGCAATTGATATTGGAGAAAAAAAAATATCTAGGCTGGCAAATGGCTCA
AATGGGCAAAGGTGCTTGCTATCAATCTCAGAGAGCGGAGTCCATTATAG
GATCCATATGGGTAGAAGAAGAAAAGCAGCTTCTATG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no499_j02.g1 MSMg01no499_j02.g1 CHROMAT_FILE:
MSMg01no499_j02.g1 PHD_FILE: MSMg01no499_j02.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:25:59 2005
         (593 letters)



>mm_chr18_75176620_75177614
          Length = 995

 Score =  953 bits (493), Expect = 0.0
 Identities = 559/583 (95%), Gaps = 11/583 (1%)
 Strand = Plus / Plus

                                                                       
Query: 19  tgtcttagttagaattttactgctgtgaacagacaccatga-c----caaggcaactctt 73
           |||||||||| | |||||| ||||||||||||||||||||| |    |||||||||||||
Sbjct: 216 tgtcttagtttggattttattgctgtgaacagacaccatgatcaaggcaaggcaactctt 275

                                                                       
Query: 74  ataaaggacaacatttaattgggcctggcttataggttcagaggttcagtccattatcct 133
           |  ||||||||||||||||||||||||||||| ||||||||||||||||| ||||||| |
Sbjct: 276 a-caaggacaacatttaattgggcctggcttacaggttcagaggttcagttcattatcat 334

                                                                       
Query: 134 caaggcagg-aacatggcagtgtccaggcaggcatggtgcaggatttgctgagggttcta 192
           |||||  || ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 caagg-tggcaacatggcagtgtccaggcaggcatggtgcaggatttgctgagggttcta 393

                                                                       
Query: 193 catcttcatctgaaggcttgtagcagaatactcactaccaaacagctaggttgaaagtat 252
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 394 catcttcatctgaaggcttgtagcagaatactcactaccaaacagctaggttgaaagta- 452

                                                                       
Query: 253 tttatacccatccccacagtgacacaggtactctaacaaggccgcatctcttaatagtgc 312
           |||| |||| |||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 453 tttaaacccgtccccacagtgacacacgtactctaacaaggccgcatctcttaatagtgc 512

                                                                       
Query: 313 cactccctgggccaagcatatacaaaccaacacactccacttcccaactgttaggcttat 372
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 513 cactccctgggccaagcatatacaaaccaacacactccacttctcaactgttaggcttat 572

                                                                       
Query: 373 gggtgtgaatcatgatatctaccttcacaaaccagttttcacctaagtaggcctctgtac 432
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 573 gggtgtgaatcatgatatctaccttcacaaaccagttttcacctaagtaggcctctgtac 632

                                                                       
Query: 433 catcctttacagtgactggcccttgtaaagcgcctttcctattttcagctagctccccaa 492
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 633 catcctttacagtgactggcccttgtaaagtgcctttcctattttcagctagctccccaa 692

                                                                       
Query: 493 gcaccttgtgttttagtatgatttgttgttctgctgcaagctcagtgaatttactggcaa 552
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 693 gcaccttgtgttttagtatgatttgttgttctgctgcaagctcagtgaatttactggcaa 752

                                                      
Query: 553 ttgatattggagaaaaaaaaa-tatctaggctggcaaa-tggc 593
           ||||||||||||||||||||| |||||||||||||||| ||||
Sbjct: 753 ttgatattggagaaaaaaaaaatatctaggctggcaaaatggc 795


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 593
Length of database: 995
Length adjustment: 10
Effective length of query: 583
Effective length of database: 985
Effective search space:   574255
Effective search space used:   574255
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)