BAC Information

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BAC

Clone NameMSMg01-500E03
Chromosome18 (Build37)
Map Location 53,409,582 - 53,410,066
singlet/doubletsinglet
Overlap geneSnx24
Upstream geneFtmt, Srfbp1, Lox, Zfp474, 1700034E13Rik, Gykl1, Sncaip, A730036E13Rik, LOC667317, LOC100042430, Snx2, Gm1859
Downstream genePpic, Prdm6, Ccdc100, Csnk1g3, EG433184, LOC667360
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-500E03.T7 (MSMg01no500_e03.b1)MSMg01-500E03.TJ (MSMg01no500_e03.g1)
ACCAG576142AG576143
length669761
length of high quality
(start - end)
489 (30 - 518)---
definitionCHROMAT_FILE: MSMg01no500_e03.b1 PHD_FILE: MSMg01no500_e03.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:26:52 2005CHROMAT_FILE: MSMg01no500_e03.g1 PHD_FILE: MSMg01no500_e03.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:26:52 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GCTAAACGACTCACTATATTCAGAGAGATCCGCGGAATTCCAGCAGCCTC
TAGGAACTGATAGAGCACTTCTGAATGCAAGGCTAATCATGTTACTTCCT
TCCCTAAACAGCTCCAACCCCGGAGCTCAAGTTCACCGACTCTTTACAGC
CCTCAGCCCGTGGCTTACTCTGTACTCAGAGATCACAATCTCTGCTGCTG
ACTTGAAATTCAGGTCTCACCCACCCCACCTACCCCTACGGGCTGTTCAC
ACCTCAGGTCCCTGTGGCTCTAACCGGTCTGCGTGCTCCTACCTCATCTG
TTATTTACAAGCTGAGTCATAAGTAACAGCCCTGAACCTAGACACACACA
CGTTCAAACCCCAAGGAGTTCACAGCCTGCAAAGCCCAGGATTGAAGGCT
CGGAGGGAAGGGAAGCAAGGGAAACCAGGCCTCTGAGAAATAACATTTGA
GTTTATCTGTTACAACAGCCTGCTGCTCTGGAGAGCCAAGTGAATGGGAG
GTCCTGGTCCTCCACCCCCACCCCCCTTNCCCCCCNNNCNCNCTCTCTCC
TCCGATTTTATTTTNCCTTCTTCACTCCGTTACTCTCAAATGTCCCCTTT
TTCTCCCTCATTATTTTTCATTTTTGTTTTTCCTCTATAATACAATTATA
TGTTTACATCACGGTTCCC
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTTCCCCG
AATTCAAGGCCAGCCTGGGCTACCAGATGCACTGCATCAAACAGGATAAA
GACCGACTCACAGGAAGGAAAAATAGTAAGTACATACTGTATAGAGGTAC
GGCGGTAGGGAGGGACGAACGCCTCCCCCCTTTTCCTCCCCTCCTCCTCC
CTCCTTCCTTCCCCCCCCCCCTTTCCTTTTTCTTCCTCCCCTCCCCCCTC
CTCCCTTCCCCCCCCCCTCCTCCCTCCCTCCCCCCCTCTTCTTTTTTTTT
TTTCCCCTTTCCTCCCCCCCCTTTCTTCCCCCCCCCCCTCCCTCTCCCCT
CTCTCCCCCCTCTCCTCCTCCTCCCCTCTCCCTCTCCTCCCTCCTCCTCC
CCCGCCTTTGTCTTCCCCCCTCCTCTCTCTCTCCTCCCCTCTCCTCCCCC
TCCCCCCCTTCTCCCTCCCTCCTTCTCCCCCCCCCTTTTCCTCTCCCCTT
CCCCCCCTTCCCTCTTCTTCCCCCCCCCCCCCCCCCTTTCTCCTTTCTCC
CCCCCCCCCCTCCCCCCCCCCCTCTTTTCTTCCCCCCCCCCCCTCCCCTT
CCTCTCTCTCTCTCTCCCCTTTCTCTCTCCTTTTTTTCCCCCTTTCTTCT
CTTTTTCCCCTTTTTTCCTCCCTTTCTCCTCCCCCCCTTCTCCCGTCCTT
TCCCCCTCCCTCTTTTTTTCCTCCCTCTTCCTTCTCCTCCTCTTTTTCCT
TCTTCTCCCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no500_e03.b1 MSMg01no500_e03.b1 CHROMAT_FILE:
MSMg01no500_e03.b1 PHD_FILE: MSMg01no500_e03.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:26:52 2005
         (489 letters)



>mm_chr18_53409379_53410266
          Length = 888

 Score =  870 bits (450), Expect = 0.0
 Identities = 477/486 (98%), Gaps = 1/486 (0%)
 Strand = Plus / Minus

                                                                       
Query: 4   cggaattccagcagcctctaggaactgatagagcacttctgaatgcaaggctaatcatgt 63
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 688 cggaattccagcagccgctaggaactgatagagcacttctgaatgcaaggctaatcatgt 629

                                                                       
Query: 64  tacttccttccctaaacagctccaaccccggagctcaagttcaccgactctttacagccc 123
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 628 tacttccttccctaaacagctccaaccccggagctcaagttcaccaactctttacagccc 569

                                                                       
Query: 124 tcagcccgtggcttactctgtactcagagatcacaatctctgctgctgacttgaaattca 183
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| 
Sbjct: 568 tcagcccgtggcttactctgtactcagagatcacaatccctgctgctgacttgaaattcc 509

                                                                       
Query: 184 ggtctcacccaccccacctacccctacgggctgttcacacctcaggtccctgtggctcta 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 508 ggtctcacccaccccacctacccctacgggctgttcacacctcaggtccctgtggctcta 449

                                                                       
Query: 244 accggtctgcgtgctcctacctcatctgttatttacaagctgagtcataagtaacagccc 303
           ||| ||||||||||||||||||||||||  ||||||||||||||||||||||||||||||
Sbjct: 448 acccgtctgcgtgctcctacctcatctggcatttacaagctgagtcataagtaacagccc 389

                                                                       
Query: 304 tgaacctagacacacacacgttcaaaccccaaggagttcacagcctgcaaagcccaggat 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 388 tgaacctagacacacacacgttcaaaccccaaggagttcacagcctgcaaagcccaggat 329

                                                                       
Query: 364 tgaaggctcggagggaagggaagcaagggaaaccaggcctctgagaaataacatttgagt 423
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 328 tgaaggctcggagggaagggaagcaagggaaaccaggcctctgggaaataacatttgagt 269

                                                                       
Query: 424 ttatctgttacaacagcctgctgctctggagagccaagtgaatgggaggtcctggtcctc 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 268 ttatctgttacaacagcctgctgctctggagagccaagtgaatgggaggtcct-gtcctc 210

                 
Query: 484 cacccc 489
           ||||||
Sbjct: 209 cacccc 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 489
Length of database: 888
Length adjustment: 10
Effective length of query: 479
Effective length of database: 878
Effective search space:   420562
Effective search space used:   420562
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)