Query= MSMg01no501_c06.b1 MSMg01no501_c06.b1 CHROMAT_FILE:
MSMg01no501_c06.b1 PHD_FILE: MSMg01no501_c06.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:27:55 2005
(279 letters)
>mm_chr18_13992339_13993017
Length = 679
Score = 462 bits (239), Expect = e-135
Identities = 269/283 (95%), Gaps = 8/283 (2%)
Strand = Plus / Plus
Query: 1 tctggtactgtctttatgggatgattttcaagagtttattaaaccttctaatgttggtgg 60
||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 201 tctggtactgtctttgtgggatgattttcaagaatttattaaaccttctaatgttggtgg 260
Query: 61 gatttttccctccgatcccttcctctccctctctctgcctctacctagcctgatttgata 120
||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||
Sbjct: 261 gatttttccctccgatcccttcctctccctctctcggcctctacctagcctggtttgata 320
Query: 121 acttacattattctaactccttttccatacaatagaaacttttgggctagtagcataaac 180
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 acttacattatgctaactccttttccatacaatagaaacttttgggctagtagcataaac 380
Query: 181 atatgccacaatggggtattatttggctttgtgggtaatggttaaaatgagaagtaacag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atatgccacaatggggtattatttggctttgtgggtaatggttaaaatgagaagtaacag 440
Query: 241 ggctcacgcaaacttttca----gtgcttacaaatagattcac 279
|||||| |||||| || ||||||||||||||||||||
Sbjct: 441 ggctcatgcaaac----caagcagtgcttacaaatagattcac 479
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 279
Length of database: 679
Length adjustment: 9
Effective length of query: 270
Effective length of database: 670
Effective search space: 180900
Effective search space used: 180900
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no501_c06.g1 MSMg01no501_c06.g1 CHROMAT_FILE:
MSMg01no501_c06.g1 PHD_FILE: MSMg01no501_c06.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:27:56 2005
(356 letters)
>mm_chr18_14120023_14120778
Length = 756
Score = 688 bits (356), Expect = 0.0
Identities = 356/356 (100%)
Strand = Plus / Minus
Query: 1 ctaatgttaattcatatattgattggaggatcatagagaatgtgtgaggtgcaggcatta 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 556 ctaatgttaattcatatattgattggaggatcatagagaatgtgtgaggtgcaggcatta 497
Query: 61 aaacctagttgtactaaatgcttgacatctctgctatccagaattgagacaaaaccagcc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 496 aaacctagttgtactaaatgcttgacatctctgctatccagaattgagacaaaaccagcc 437
Query: 121 ataaggagtttgctatattgcatattcagcacagaatcctgggagaaactcagcaagttg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 436 ataaggagtttgctatattgcatattcagcacagaatcctgggagaaactcagcaagttg 377
Query: 181 gtactgaaaagtgttcttgcacaaatttgatgagcttcccaagagatacaggtaaatgat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 376 gtactgaaaagtgttcttgcacaaatttgatgagcttcccaagagatacaggtaaatgat 317
Query: 241 ctgagaggagagtttctcaaaccgtgctgcgtaagtgtatgacaattcaaaggtgatcac 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 316 ctgagaggagagtttctcaaaccgtgctgcgtaagtgtatgacaattcaaaggtgatcac 257
Query: 301 attgggtgtcctggtggctttcctagccagagatgtgagtggcagactgggcggaa 356
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 256 attgggtgtcctggtggctttcctagccagagatgtgagtggcagactgggcggaa 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 356
Length of database: 756
Length adjustment: 9
Effective length of query: 347
Effective length of database: 747
Effective search space: 259209
Effective search space used: 259209
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
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