BAC Information

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BAC

Clone NameMSMg01-502B07
Chromosome18 (Build37)
Map Location 64,672,693 - 64,673,290
singlet/doubletsinglet
Overlap geneNars
Upstream geneLOC627792, Txnl1, Wdr7, LOC629436, LOC667773, St8sia3, LOC433193, Onecut2, LOC667783, LOC100043304, Fech
Downstream geneAtp8b1, LOC629480, Nedd4l, Alpk2, LOC667816, Malt1, LOC638570
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-502B07.T7 (MSMg01no502_b07.b1)MSMg01-502B07.TJ (MSMg01no502_b07.g1)
ACCAG577522AG577523
length717733
length of high quality
(start - end)
535 (57 - 591)612 (75 - 686)
definitionCHROMAT_FILE: MSMg01no502_b07.b1 PHD_FILE: MSMg01no502_b07.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:29:01 2005CHROMAT_FILE: MSMg01no502_b07.g1 PHD_FILE: MSMg01no502_b07.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:29:02 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCATTA
TTATCGTTCTGTAGGACAACTTGAGATTGGGGGGGTGGAAGGACCTCCCT
TCGTCCTTTGATTATTTAGAATTGTTTTAGCTAATTTAGATTTTTGTTTG
TTGTTTCCATATGAAGCTGAAAATTGTCCTTTTACATTTTCAGTTTGCTT
CACTTGCTTGCTCAGAGTTACCCCAAGAATATTTATTATTACTATTATTA
TTATTATTATTATTATTATTATTTTGGAGGCCATGGTGAAAGACACTGTC
GCCTACCTTATGTTTTGAGACGGACGGACTAGCTCATTGTCCTAGAGCTC
GCTGAATAGACTAGTCTGGGTAGACACCACGCCCTGGGATCTGCTTGTCT
CTGCCTCATTAAAACTAGCATTGCAAATGCATGCTACCAGGTCTGACATT
ATTAATTTTCAAGGATTGTGAAGATTGAACTCACTGGGCTATGCCTCAGC
TTAGGATTTTATCCTCTCTAAGGTTTTTTTTTTTTTAAGCATTCTCTCTG
TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGNNNNNNNNNNNN
NNNNNNNNNNTTNNTTTTNNNTNNTTTTTTTTTTTNTNNTNTTTTTTTTT
TTTTTNNNNTTNNTTTTTTTTTTTTNNNNNTTTTTTGTTTTTTTTTTTTT
TNTTTTTGGTGTNNNNT
CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXAGAGTGTCAAAACTGGTAGCAATCGC
CTTTACCCACTGAGCCATCTCACTAGCCCCACAAGGCCAGTCTTTAAAAT
AGGGTCTCGAGCGCAAAGCAGCCTTGCCCTTGCTGTGCAGCTGAGGATGA
CTTGAACCCCTGATCCTCCTCCCTGTCTTTACCTTCCAAGTGCTGGAGTT
ACGGGTCAAAGACAAAGAGGAGTATCTTAGCTACCTTCAAGCACCGTCTG
AAAATTTCTCCAGTTATTATATCAAACAGGAAAAGAAGTACCTTATTCTC
TCTGGCAATAAAATCTCAAGTTTATAAAGCCCGACCTTTGAGATCCGACC
ATGTAGTCTTTGCCTGTTTGAGCCCCGACCCGGGCTACTGTGCTTCTGTT
CTATGAGCCATGCATCCTGACCTGCCTGGTTTCATTCCTCAGCCAAAGGC
CAGAGGCCATAAAGTTACAAAAGTCAGTGGCTAGGGGGTTTAAGCAGTTA
GGCCGATGAGGAAACATTAACAACATTTATTTAAGATTAGGTAAGAGCCC
CCCTGCATACAAAACGACCACACACACTCACATACACATGCACGCACATG
AGAAGCAGTCATAAAAAGAACGAAGGGAGGAATGCCCAAATCCATAAAAA
CTCTCCACCCATTCCCGGAGAAGACATGCACAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no502_b07.g1 MSMg01no502_b07.g1 CHROMAT_FILE:
MSMg01no502_b07.g1 PHD_FILE: MSMg01no502_b07.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:29:02 2005
         (612 letters)



>mm_chr18_64672479_64673490
          Length = 1012

 Score = 1071 bits (554), Expect = 0.0
 Identities = 590/608 (97%), Gaps = 10/608 (1%)
 Strand = Plus / Plus

                                                                       
Query: 5   tgtcaaaactggtagcaatcgcctttacccactgagccatctcactagccccacaaggcc 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 215 tgtcaaaactggtagcaatcgcctttacccactgagccatctcactagccccacaaggcc 274

                                                                       
Query: 65  agtctttaaaatagggtctcgagcgcaaagcagccttgcccttgctgtgcagctgaggat 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||      
Sbjct: 275 agtctttaaaatagggtctcgagcgcaaagcagccttgcccttgctgtgcagct------ 328

                                                                       
Query: 125 gacttgaacccctgatcctcctccctgtctttaccttccaagtgctggagttacgggtca 184
               ||||||||||||||||||||||||||||||||||||| |||||||||||| |||||
Sbjct: 329 ----tgaacccctgatcctcctccctgtctttaccttccaactgctggagttacaggtca 384

                                                                       
Query: 185 aagacaaagaggagtatcttagctaccttcaagcaccgtctgaaaatttctccagttatt 244
           ||||||||||||||||||||||| |||||||| ||| |||||||||||||||||||||||
Sbjct: 385 aagacaaagaggagtatcttagcgaccttcaaacactgtctgaaaatttctccagttatt 444

                                                                       
Query: 245 atatcaaacaggaaaagaagtaccttattctctctggcaataaaatctcaagtttataaa 304
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 acatcaaacaggaaaagaagtaccttattctctctggcaataaaatctcaagtttataaa 504

                                                                       
Query: 305 gcccgacctttgagatccgaccatgtagtctttgcctgtttgagccccgacccgggctac 364
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 505 gcccgacctttgagatccgaccatgtagtctttgcctgtttgagccccgaccagggctac 564

                                                                       
Query: 365 tgtgcttctgttctatgagccatgcatcctgacctgcctggtttcattcctcagccaaag 424
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 tgtgtttctgttctatgagccatgcatcctgacctgcctggtttcattcctcagccaaag 624

                                                                       
Query: 425 gccagaggccataaagttacaaaagtcagtggctagggggtttaagcagttaggccgatg 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 gccagaggccataaagttacaaaagtcagtggctagggggtttaagcagttaggccgatg 684

                                                                       
Query: 485 aggaaacattaacaacatttatttaagattaggtaagagcccccctgcatacaaaacgac 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 aggaaacattaacaacatttatttaagattaggtaagagcccccctgcatacaaaacgac 744

                                                                       
Query: 545 cacacacactcacatacacatgcacgcacatgagaagcagtcataaaaagaacgaaggga 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 cacacacactcacatacacatgcacgcacatgagaagcagtcataaaaagaacgaaggga 804

                   
Query: 605 ggaatgcc 612
           ||||||||
Sbjct: 805 ggaatgcc 812


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 612
Length of database: 1012
Length adjustment: 10
Effective length of query: 602
Effective length of database: 1002
Effective search space:   603204
Effective search space used:   603204
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)