BAC Information

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BAC

Clone NameMSMg01-502M11
Chromosome18 (Build37)
Map Location 71,528,831 - 71,529,458
singlet/doubletsinglet
Overlap geneDcc
Upstream gene4930503L19Rik, Stard6, Poli, Mbd2, EG668032
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-502M11.T7 (MSMg01no502_m11.b1)MSMg01-502M11.TJ (MSMg01no502_m11.g1)
ACCAG578053AG578054
length701686
length of high quality
(start - end)
628 (70 - 697)239 (58 - 296)
definitionCHROMAT_FILE: MSMg01no502_m11.b1 PHD_FILE: MSMg01no502_m11.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:29:54 2005CHROMAT_FILE: MSMg01no502_m11.g1 PHD_FILE: MSMg01no502_m11.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:29:54 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTAACT
TCTCTTGGGAAAAGAACATCCAGGCTTTCTTTTTCAGAATTGGAAACACA
TTCTGTTGTTTACTTTGACAAGCAGAAGATTTATTTGAGTTCAGAGTAAG
GAACATGGTAGTGGAAAATAATTTCATTCTTCACTACGTATAGTTTCTAT
CATACCTTGTTTTTATTTAGAAAATTTCTATTCTTTCTTTTTAAGATATT
ATCTGCTTTGATTTATGTCTATAAGTAACTGTTTATAATGAAATAAAATA
TAAATATTATTAAAAACTACAAAAGTACTGAAACAGAATCAATGAAGGTG
GACCAGAACACCAAGCAATGAGACTTAAAAAAAAAATGAGATGTACCAGC
CTGTGTTTTCAAAGGCCTGGCACACTGAAAAAGGAATGCATATGCTCCGA
GCGGAGAGATTTTGTGTTTAGGTTCTGCCTCATGTTTATCAGCTCAGATG
AAAATTCTGTTTGCTATTACACTAAGAGCAATTTCCTAAACAAAACCAAA
CTTCAACTTAAATTTTAATCACATTTGTAAGCATCACATTATCTTTTCAT
TTTGAAAAAAAAATCACAGCATAGCATATGAACTGAGTTTGCCAACTAAA
ACTGCGTGTTCCTGGTTTATCTGCACCACAGGAGGACACAGTCACTGTTT
N
CCTGGCGGTCGCCGGGTCANCATCAGGAGGTGAACTATAGAATTACAAAA
AGAAGTCTCTGCTTAGNAATGTACCTTTTTTTTTAATTGGGTTATTTGGC
TTGTTGGCCTTCCTGCTCATATGTAGCAGATATGTAGCTTGACCTTCTTG
TGGGTCCTGAACAACTGGAGGGGGCTATCTCAGAAACTGTTGACTATCTG
TGGGAAATGCTCTACTTGATGGGCTACCTTGTCTGGCCACAGTGGTAGAG
TGGAACCTAGCCACGCTAAGAGATTGAAATACAAGGGTGGGGTGTGATGG
GTATACTTATGGGATCCCCAACTGCTTTGAAGAGAATGTGAGGGGGAAGG
ATTGTGGGAGGGAGCTATGGGAAGGGGTCAATGAGCAGGATGTACCCCGA
GTAAGTAAAAAAAAATAATTAAGAGAGAGAGAGAGAGAGAGAGAGAGAAA
CTAACCAAGCTATAAGCAGGAAGCCAGTAAGCAGCACTCCACATGGGCTT
TGGAACTCCTAGCTCCTGGTTCCTGCTGTTTGAATTCCTGTCCTGACTTC
TCTCAGTGATGGGCTGTGATGTGGATCTCCAAGCACCAACAAAACCTTTC
CTCCTCACATTGTTTTTGCCCTTGTTATTTTTTTTTGTCACAGAAACCCT
TAAGGAGGCATAAGTTTATCAAATAATTTGCCTCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no502_m11.b1 MSMg01no502_m11.b1 CHROMAT_FILE:
MSMg01no502_m11.b1 PHD_FILE: MSMg01no502_m11.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:29:54 2005
         (628 letters)



>mm_chr18_71528631_71529658
          Length = 1028

 Score = 1154 bits (597), Expect = 0.0
 Identities = 621/629 (98%), Gaps = 2/629 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   ccaggctttctttttcagaattggaaacacattctgttgtttactttgacaagcagaaga 60
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ccaggctttctttttcagagttggaaacacattctgttgtttactttgacaagcagaaga 260

                                                                       
Query: 61  tttatttgagttcagagtaaggaacatggtagtggaaaataatttcattcttcactacgt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tttatttgagttcagagtaaggaacatggtagtggaaaataatttcattcttcactacgt 320

                                                                       
Query: 121 atagtttctatcataccttgtttttatttagaaaatttctattctttctttttaagatat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atagtttctatcataccttgtttttatttagaaaatttctattctttctttttaagatat 380

                                                                       
Query: 181 tatctgctttgatttatgtctataagtaactgtttataatgaaataaaatataaatatta 240
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |
Sbjct: 381 tatctgctttgatttatgtctataagtaactgtttataatgaaataaaatataaataa-a 439

                                                                       
Query: 241 ttaaaaactacaaaagtactgaaacagaatcaatgaaggtggaccagaacaccaagcaat 300
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 440 ttaaaaactacaaaagtactgaaacggaatcaatgaaggtggaccagaacaccaagcaat 499

                                                                       
Query: 301 gagacttaaaaaaaaaa-tgagatgtaccagcctgtgttttcaaaggcctggcacactga 359
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 gagacttaaaaaaaaaaatgagatgtaccagcctgtgttttcaaaggcctggcacactga 559

                                                                       
Query: 360 aaaaggaatgcatatgctccgagcggagagattttgtgtttaggttctgcctcatgttta 419
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 560 aaaaggaatgcatatgctccgagcggagggattttgtgtttaggttctgcctcatgttta 619

                                                                       
Query: 420 tcagctcagatgaaaattctgtttgctattacactaagagcaatttcctaaacaaaacca 479
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 tcagctcatatgaaaattctgtttgctattacactaagagcaatttcctaaacaaaacca 679

                                                                       
Query: 480 aacttcaacttaaattttaatcacatttgtaagcatcacattatcttttcattttgaaaa 539
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 aacttcaacttaaattttaatcacatttgtaagcatcacattatcttttcattttgaaaa 739

                                                                       
Query: 540 aaaaatcacagcatagcatatgaactgagtttgccaactaaaactgcgtgttcctggttt 599
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 740 aaaaatcacagcatagcatatgaactgagtttgccaactaaaactgcgtgttcctggttt 799

                                        
Query: 600 atctgcaccacaggaggacacagtcactg 628
           ||||||| |||||||||||||||||||||
Sbjct: 800 atctgcatcacaggaggacacagtcactg 828


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 628
Length of database: 1028
Length adjustment: 10
Effective length of query: 618
Effective length of database: 1018
Effective search space:   629124
Effective search space used:   629124
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)