BAC Information

Click to search

BAC

Clone NameMSMg01-502O13
Chromosome18 (Build37)
Map Location 31,987,398 - 31,987,585
singlet/doubletsinglet
Overlap geneWdr33
Upstream geneRit2, EG666130, Syt4, LOC383420, Slc25a46, Sap130, LOC640549, Ammecr1l, Polr2d, EG626327
Downstream geneSft2d3, Lims2, Gpr17, Myo7b, Iws1, Proc, LOC546710, Map3k2, Ercc3, Bin1, Gypc, LOC100041160, LOC100041170, Tslp
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-502O13.T7 (MSMg01no502_o13.b1)MSMg01-502O13.TJ (MSMg01no502_o13.g1)
ACCAG578150AG578151
length734737
length of high quality
(start - end)
188 (122 - 309)416 (322 - 737)
definitionCHROMAT_FILE: MSMg01no502_o13.b1 PHD_FILE: MSMg01no502_o13.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:30:03 2005CHROMAT_FILE: MSMg01no502_o13.g1 PHD_FILE: MSMg01no502_o13.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:30:03 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TTTTTAAATTTGCGGCTGCAAANGAATCACGATTCAAAAAAACGGCGGAA
NNCCAAGTTAGCTAAACAGCGGAGGNCCNNTCACTCCAGGNGACTANGGG
AGGCATTTGATCTTCACCTGAATACAGAGCACCTCCTGCAGAACTCAGAA
GTAGGACACAGCATGTTCTCAGTGCAAGCGTCTCAAAATACTGCTATATT
GGTAGTCACTTTATTCTTTCACATATACTGAGTCATTTTCAGAATTATTG
AACTCAACATGCTAATCCATCCCACTAATTCAAGAAATACAAGTGATACT
TGTTACTCTTTAATTTTGTTATTNGNNNAAAAAGCACTTTTGCCAGGGCT
GGAGAGATGGCTCAGTGGTTAAGAGCACTGACTGCTCTTCCAGAGGTCCT
GAGTTCAATTCCCAGCAACCACATGGTGGCTCACAACCATCTGTAATGAG
ATCTGATGCCCTCTTCTGGCATGCAGGTGTGCAGATAGAGCACTCATATA
AACCAGATAAATAAATTTTTAACAAAAGCACTTTGGCCACTGGAAATACT
TTTACTGCACTTACCTCCAAATACTTAATTACAGAGGGATTGTAGTCTAT
GGTTTTTCGGCTTACAGCTTTTCTCATTCGTTTTTCATCAAAGGTGAGCT
GCTGCATTGCTTGCTGCTGTGCAAAATCAAGTCGCTTATACAATAATTGT
CGGGGAGTCTGATGTTGAAACTTCGGCATATGGA
CGATGCTGTGGGAGTCCTGGNGGCCGCCTGTTTTCAAATATGGGGTGAAC
TATAGAAGTTTCTCAAAAGGCACAGGNAAATAATGATACATATATGGTTT
AAATGTATTAGAAGAAGAAATAGCAGGGTGGAGATTGGAGGAGGGCTGCT
AACCTTTTGTCACTGTGGACCTTTATGCGGGATTATAAAATGTCTCCTTG
CCAGGTGAAGCTGTACAAAGCAACTTTGAGCCATTGAAAGTGTTTGTTTT
TAGGGAGATGGGTCAGTCAATTGTAATGCTTGTGACGCAAGCATGAATAC
CTGAGTTTAATCTTCCTTGTCCACATAAAAGCCAAGAGTGGTGACCCATG
TCTATAGTCCTAGCACTGGGGAGGCAAAGACAGGAAAATGCTTGCTACCC
ATCCATTCTAAGCCTAATCAGTACACTCCAGGTTCAAGGAGAGATTCTTG
TCTAGAAATGTAAGAAAGAAACCCCTAAAGTAAACCCCTGACTTCCGTGT
GCATGCTTGTGCATATGCAAGTACAACCCCATAACGATGTGCATGTGTGC
ACATACCCAGTGCTTACTCCATGAGCTTTGAAAATGCTGCAGGGATGTAA
CTCAGTGGTAAAGCACCTGGTCGGCATATGTGAGCTCCTGTGTGGAATCC
CCAGTGCTACAAACATAAAAAGTAAAATAAGTTATGACTTTACTAAAAAC
TGGTTTTGTCACTTATAGTATGTAAGAAAGTGAGGAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no502_o13.b1 MSMg01no502_o13.b1 CHROMAT_FILE:
MSMg01no502_o13.b1 PHD_FILE: MSMg01no502_o13.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:30:03 2005
         (188 letters)



>mm_chr18_31987198_31987785
          Length = 588

 Score =  356 bits (184), Expect = e-103
 Identities = 187/188 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   atacagagcacctcctgcagaactcagaagtaggacacagcatgttctcagtgcaagcgt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 388 atacagagcacctcctgcagaactcagaagtaggacacagcatgttctcagtgcaagcgt 329

                                                                       
Query: 61  ctcaaaatactgctatattggtagtcactttattctttcacatatactgagtcattttca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328 ctcaaaatactgctatattggtagtcactttattctttcacatatactgagtcattttca 269

                                                                       
Query: 121 gaattattgaactcaacatgctaatccatcccactaattcaagaaatacaagtgatactt 180
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 268 gaattaatgaactcaacatgctaatccatcccactaattcaagaaatacaagtgatactt 209

                   
Query: 181 gttactct 188
           ||||||||
Sbjct: 208 gttactct 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 188
Length of database: 588
Length adjustment: 8
Effective length of query: 180
Effective length of database: 580
Effective search space:   104400
Effective search space used:   104400
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)