CCCTTTTTTNCCACCCGTTTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXTTCGACAATCCGCGGAATTCTACCAGATTTCCCAATGAAGACCTGATA
CCATTTTTCCTCAAACTATTCCATAAATTAGAAACAGAAGGAATACTACC
TAACTTGTTTTATGAAGCCACCATTACTCTGATAACTAAACTACACAAAG
ACCCAACCAAAAAAGAGAACTTTAGACCTATCTTGCTTATGAATATCGAT
ACAAAACAATCAATGAAATACTTGCAAACCGAATCCAATAACACATCAAA
ATCATCATTCACCATGATCAAGTAGGCTTCATCCCTTGGATGCAAGGTTG
GTTTAATATACAAAAATTCATTAACACAATCCTCTATATAAACAAACTCA
AAGGAAAAAAATGACATGATCATCTCCTTAGATGTTGAAAAAGCATTTGA
CAAAATACAACACACCTTCATGTTAAAAGTATTGGAGAGATCAGGAATTC
AAGGCCCATACCTAAACATAATAAAAACAATTTACTGCAAACCAACAGCC
AAGATCAAATTAAATGGAGACATAGTTGAATCAATCTCACTGAAATTGGG
GACAAGACAATGATGCCCACTCTCCCCATATCTATTCAACATAGTACTTG
AAGTGTTAGCTAGAACAATAAGACACACAATTGAGATCAAGGGGATACAA
ATT

NTTTTCCTTTTTTTTCAATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGTTTGGCTTG
AATCCTGACTCTCCTAGATGATTTAAAACTTTATGAATAAATAAATTCCC
TCCTCTTGTTTAAACTAGCTTAAGTAGTGCTTTTATTAGTAACAATACAG
TGGTGGAGTCTGGAGCTCTGCGACTTCAAAGTTGAAGTGGCATAATTCAC
GTCACTGGGTTGTTAGTCAATAGACATTGTTATGGCAGGTTTCAAAAGTT
CCATCATCCGTATCATGACTTACAAATAAACATACTCTGTAATTTCCTTA
CCCTATTAATAATGAGAATTTTTTCTCATATTAATTCAAATATGTCTGGT
GTAGCAATTTACTATGGAGGAGCACAGGCAGCAGGGCTTTTCAAAGCCTT
AGCCTGTATTATGAATGAGCTTTTCATTACAAATGCTATTATGAATGTTC
TGCGGGATTTAGGCATATTTTACTTAAAAGTGTTCAGTAAAGAAACATTT
CAGTGTGTNTTCTCTCCTCTCTTCCAAATACAATTGTCTCATATGGGACT
TTTCAGGGCCCTGGGTCAAAGTTAAACAAAAGGTTCCCTTTTTTGGGTTG
GTTTGGGTTCTTTTTTNGNNAANTNCNNTTCTCCCCTTCCCCCCCCCCGT
CTTTTTTTCTCTTT

Query= MSMg01no503_a07.g1 MSMg01no503_a07.g1 CHROMAT_FILE:
MSMg01no503_a07.g1 PHD_FILE: MSMg01no503_a07.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:30:11 2005
         (480 letters)



>mm_chr18_59770969_59771846
          Length = 878

 Score =  890 bits (460), Expect = 0.0
 Identities = 475/480 (98%), Gaps = 2/480 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   agtttggcttgaatcctgactctcctagatgatttaaaactttatgaataaataaattcc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agtttggcttgaatcctgactctcctagatgatttaaaactttatgaataaataaattcc 260

                                                                       
Query: 61  ctcctcttgtttaaactagcttaagtagtgcttttattagtaacaatacagtggtggagt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctcctcttgtttaaactagcttaagtagtgcttttattagtaacaatacagtggtggagt 320

                                                                       
Query: 121 ctggagctctgcgacttcaaagttgaagtggcataattcacgtcactgggttgttagtca 180
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 321 ctggagctctgcgacttcaaagttgatgtggcataattcacgtcactgggttgttagtca 380

                                                                       
Query: 181 atagacattgttatggcaggtttcaaaagttccatcatccgtatcatgacttacaaataa 240
           |||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 381 ataggcattgttatggcaggtttcaaaagttccatcatccctatcatgacttacaaataa 440

                                                                       
Query: 241 acatactctgtaatttccttaccctattaataatgagaattttttctcatattaattcaa 300
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 441 acatactctgtaatttccttaccctattaataatgagaattttt-ctcatattaattcaa 499

                                                                       
Query: 301 atatgtctggtgtagcaatttactatggaggagcacaggcagcagggcttttcaaagcct 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 atatgtctggtgtagcaatttactatggaggagcacaggcagcagggcttttcaaagcct 559

                                                                       
Query: 361 tagcctgtattatgaatgagcttttcattacaaatgctattatgaatgttctgcgggatt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 tagcctgtattatgaatgagcttttcattacaaatgctattatgaatgttctgcgggatt 619

                                                                       
Query: 421 taggcatattttacttaaaagtgttcagtaaagaaacatttcagtgtgtnttctctcctc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 620 taggcatattttacttaaaagtgttcagtaaagaaacatttcagtgtgt-ttctctcctc 678


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 480
Length of database: 878
Length adjustment: 10
Effective length of query: 470
Effective length of database: 868
Effective search space:   407960
Effective search space used:   407960
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)