BAC Information

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BAC

Clone NameMSMg01-503A10
Chromosome18 (Build37)
Map Location 60,657,988 - 60,658,487
singlet/doubletsinglet
Overlap gene2010002N04Rik
Upstream geneLOC667549, EG240327, LOC546714, EG225594, F830016B08Rik, LOC667578, EG667584, LOC435565, Iigp1, EG629292, LOC667597
Downstream geneDctn4, Rbm22, Myoz3, Synpo, LOC100042675, Ndst1, Rps14, LOC667619, Cd74, Tcof1, LOC100042699, Arsi, Camk2a, Slc6a7, Cdx1, Pdgfrb, Csf1r, A630042L21Rik, Slc26a2, Pde6a, EG667279, Ppargc1b, LOC667675, 4933429F08Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-503A10.T7 (MSMg01no503_a10.b1)MSMg01-503A10.TJ (MSMg01no503_a10.g1)
ACCAG578240AG578241
length726721
length of high quality
(start - end)
623 (91 - 713)500 (86 - 585)
definitionCHROMAT_FILE: MSMg01no503_a10.b1 PHD_FILE: MSMg01no503_a10.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:30:12 2005CHROMAT_FILE: MSMg01no503_a10.g1 PHD_FILE: MSMg01no503_a10.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:30:12 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GCTTTTTTTTTCCCTAAAATTGCGGCCGCTAAACGAATATTATTTGTTCG
AAAACACCGCGGATTCAAGGGCCATACCTAAACAAGAGAAAAGCAATCTA
CAGCAAACCAGTAGCCAACATCAAAGTAAATGGAGAGAAGCTGGAAGCAA
TCCCACTAAAATCAGGGACTAGACAAGGCTGCCCACTTTCTCCCTACCTT
TTCAACATAGTACTTGAAGTATTAGCCAGAGCAATTCGACAACAAAAGGA
GATCAAGGGGATACAAATTGGAAAGGAGGAAGTCAAAATATCACTTTTTG
CAGATGATATGATAGTATATATAAGTGACCCTTTAAATTCCACCAGAGAA
CTCCTAAACCTGATAAACAGCTTCGGTGAAGTAGCTGGATATAAAATTAA
CTCAAACAAGTCAATGGCCTTTCTCTACACAAAGAATAAACAGGCTGAGA
AAGAAATTAGGGAAACAACACCCTTCTCAATAGTCACAAATAATATAAAA
TATCTCGGCGTGACTCTAACTAAGGAAGTGAAAGATCTGTATGATAAAAA
CTTCAAGTCTCTGAAGAAAGAAATTAAAGAAGATCTCAGAAGATGGAAAG
ATCTCCCATGCTCATGGATTGGCAGGATCAATATTGTAAAAATGGCTATC
TTGCCTAAAGCAATCTACAGATTCAATGCAATCCCCATCAAAATTTCAAC
TCAATTCTTCAATGAATTAGAAGGAG
TTCTTTCTTTTCAATGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXACTGGCGCGTATACT
TGCGGATCACTGGGGACCCTCGACCCCTTAAAGTTCTTTCTGGAGGTAGA
AGGAGAACCCCAAGAAAGACTGGGATATTCAAGGCCAAATGCATAGCAGC
CAGGAGGGGAAATGACCAGAATTAGAACTGCCTGCATGTTAGGTAAAGGC
AAGCCTGACTTAAACTGTGTACTTACAGTTTTGGTTATATATAGATAGAG
CGTCATTATCCATTGATTTGGATTCTGACTGTCTGGCTGAATATGACCTA
CTATACAGGATCGAGGAAAGGGAGCAGCAGTGGGAGGAGGAGAAAGAGAG
AAAAGAAAACGGTATTTCCTGAATTAGTTCGAATCAATAATGACCAGCGT
CCGGCATGTGTTGCTATTCCTGACCCCTGCCCCAGGCAGACATTGCTGAT
CAGCCTGTTGTGCTTCACCTTCTCAGGGCCCCAAATCCTTAACTTCTTTC
CTGGTCTCCTAGACTTCACTTAATGGCTCTGAGGTGTGGTCAAGGACGTA
ACCAGTGGGAATACCAGAGCCCTGTCTGCCTGTCACCATCGAAGACAGAA
CAGGGCTTTTGAAATCATTACCCCTTTTTTCTTTTAATCTTATTTTTAAA
ATGTAAAAAATGCTGAGCTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no503_a10.g1 MSMg01no503_a10.g1 CHROMAT_FILE:
MSMg01no503_a10.g1 PHD_FILE: MSMg01no503_a10.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:30:12 2005
         (500 letters)



>mm_chr18_60657788_60658687
          Length = 900

 Score =  967 bits (500), Expect = 0.0
 Identities = 500/500 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   actggcgcgtatacttgcggatcactggggaccctcgaccccttaaagttctttctggag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 700 actggcgcgtatacttgcggatcactggggaccctcgaccccttaaagttctttctggag 641

                                                                       
Query: 61  gtagaaggagaaccccaagaaagactgggatattcaaggccaaatgcatagcagccagga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 640 gtagaaggagaaccccaagaaagactgggatattcaaggccaaatgcatagcagccagga 581

                                                                       
Query: 121 ggggaaatgaccagaattagaactgcctgcatgttaggtaaaggcaagcctgacttaaac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 580 ggggaaatgaccagaattagaactgcctgcatgttaggtaaaggcaagcctgacttaaac 521

                                                                       
Query: 181 tgtgtacttacagttttggttatatatagatagagcgtcattatccattgatttggattc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 520 tgtgtacttacagttttggttatatatagatagagcgtcattatccattgatttggattc 461

                                                                       
Query: 241 tgactgtctggctgaatatgacctactatacaggatcgaggaaagggagcagcagtggga 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 460 tgactgtctggctgaatatgacctactatacaggatcgaggaaagggagcagcagtggga 401

                                                                       
Query: 301 ggaggagaaagagagaaaagaaaacggtatttcctgaattagttcgaatcaataatgacc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 400 ggaggagaaagagagaaaagaaaacggtatttcctgaattagttcgaatcaataatgacc 341

                                                                       
Query: 361 agcgtccggcatgtgttgctattcctgacccctgccccaggcagacattgctgatcagcc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 340 agcgtccggcatgtgttgctattcctgacccctgccccaggcagacattgctgatcagcc 281

                                                                       
Query: 421 tgttgtgcttcaccttctcagggccccaaatccttaacttctttcctggtctcctagact 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 280 tgttgtgcttcaccttctcagggccccaaatccttaacttctttcctggtctcctagact 221

                               
Query: 481 tcacttaatggctctgaggt 500
           ||||||||||||||||||||
Sbjct: 220 tcacttaatggctctgaggt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 500
Length of database: 900
Length adjustment: 10
Effective length of query: 490
Effective length of database: 890
Effective search space:   436100
Effective search space used:   436100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)