Query= MSMg01no503_m10.b1 MSMg01no503_m10.b1 CHROMAT_FILE:
MSMg01no503_m10.b1 PHD_FILE: MSMg01no503_m10.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:31:09 2005
(546 letters)
>mm_chr18_80825631_80826576
Length = 946
Score = 942 bits (487), Expect = 0.0
Identities = 529/547 (96%), Gaps = 8/547 (1%)
Strand = Plus / Minus
Query: 1 tctggtagctggcaagcgatgaaagaaagtggaagttcctaaacaagggaggggtgggga 60
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 743 tctggtagctggcaagcgatgaaagaaagtggaagttccgaaacaagggaggggtgggga 684
Query: 61 cctcaggatgtcagtagtccccaaagcatcaatagtgctggcaaatctatcaggtcagcc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 cctcaggatgtcagtagtccccaaagcatcaatagtgctggcaaatctatcaggtcagcc 624
Query: 121 cttctagaatctagacgttgaagggcgagcgtggcaacctgaaaaacacatgctcggaaa 180
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 623 cttctagaatctagacgttgaagggcgagcatggcaacctgaaaaacacatgctcggaaa 564
Query: 181 aacctgttttagctcgaggtcgcttactgccatccttgtcccacaaagcaacacca---- 236
|||||||||||||||||||| |||||| ||||||||||||||||||||||||||||
Sbjct: 563 aacctgttttagctcgaggttgcttaccgccatccttgtcccacaaagcaacaccaggag 504
Query: 237 ggttttactgacaccttaagctccccattgtgcagtctgagcccaggttgatccctaacc 296
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 gg----actgacaccttaagctccccattgtgcagtctgagcccaggttgatccctaacc 448
Query: 297 ccacaggacaagttccaggctcaggtatgttggaaaagagctgccactggctatgctcac 356
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 ccacaggacaagttccaggctcaggtatgttggaaaagagctgccactggctatgctcac 388
Query: 357 agcgatggtgatgctgaagctactggagattatgatgtcagtgagcaagcaagggagtag 416
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 agcaatggtgatgctgaagctactggagattatgatgtcagtgagcaagcaagggagtag 328
Query: 417 ccaaaggaaccagacaaaacccgaccatgctcgattgcctgggtaaccaaccacactgtg 476
||||||||||||||||||||| |||||| |||| ||||||||||||||||||||||||||
Sbjct: 327 ccaaaggaaccagacaaaacctgaccatcctcggttgcctgggtaaccaaccacactgtg 268
Query: 477 caaatgcgggtgtgcactcaggaaaggaggccaggtactcacttctgctgcctcgagacc 536
||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 caaatgcgggtgtgcgctccggaaaggaggccaggtactcacttctgctgcctcgagacc 208
Query: 537 acacaag 543
|||||||
Sbjct: 207 acacaag 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 546
Length of database: 946
Length adjustment: 10
Effective length of query: 536
Effective length of database: 936
Effective search space: 501696
Effective search space used: 501696
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no503_m10.g1 MSMg01no503_m10.g1 CHROMAT_FILE:
MSMg01no503_m10.g1 PHD_FILE: MSMg01no503_m10.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:31:09 2005
(257 letters)
>mm_chr18_80668273_80668929
Length = 657
Score = 466 bits (241), Expect = e-136
Identities = 253/257 (98%)
Strand = Plus / Plus
Query: 1 tgccatggcctgtttcatgcatcaacttgtggctttaaaatcatgcttcgagcacatatc 60
||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||
Sbjct: 201 tgccatggcctgtttcatgcatcaacttgtgactttaaaaacatgcttcgagcacatatc 260
Query: 61 ttataaaggtaagcgaacaccagcttggactgggctgtgatagatgtaaaactacataca 120
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttgtaaaggtaagcgaacaccagcttggactgggctgtgatagatgtaaaactacataca 320
Query: 121 acatttctaaaataggaaaagcttcgtgacatcgggcttagcattgatttcttagcatga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 acatttctaaaataggaaaagcttcgtgacatcgggcttagcattgatttcttagcatga 380
Query: 181 cagagatccacaggcaagaacaataaggacagataaaattacatctagcttttaagatgt 240
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 381 cagagatccacaggcaagaacaataaggacagataaaattacatcaagcttttaagatgt 440
Query: 241 ctgctatcagaggacac 257
|||||||||||||||||
Sbjct: 441 ctgctatcagaggacac 457
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 257
Length of database: 657
Length adjustment: 9
Effective length of query: 248
Effective length of database: 648
Effective search space: 160704
Effective search space used: 160704
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
