Query= MSMg01no503_m11.b1 MSMg01no503_m11.b1 CHROMAT_FILE:
MSMg01no503_m11.b1 PHD_FILE: MSMg01no503_m11.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:31:10 2005
(409 letters)
>mm_chr18_80825938_80826746
Length = 809
Score = 700 bits (362), Expect = 0.0
Identities = 395/414 (95%), Gaps = 14/414 (3%)
Strand = Plus / Minus
Query: 1 tctggtagctggcaagcgatgaaagaaagtggaagttcctaaacaagggaggggtgggga 60
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 436 tctggtagctggcaagcgatgaaagaaagtggaagttccgaaacaagggaggggtgggga 377
Query: 61 cctcaggatgtcagtagtccccaaagcatcaatagtgctggcaaatctatcaggtcagcc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 376 cctcaggatgtcagtagtccccaaagcatcaatagtgctggcaaatctatcaggtcagcc 317
Query: 121 cttctagaatctagacgttgaagggcgagcgtggcaacctgaaaaacacatgctcggaaa 180
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 316 cttctagaatctagacgttgaagggcgagcatggcaacctgaaaaacacatgctcggaaa 257
Query: 181 aacctgttttagctcgaggtcgcttactgccatccttgtcccacaaagcaacacc----- 235
|||||||||||||||||||| |||||| |||||||||||||||||||||||||||
Sbjct: 256 aacctgttttagctcgaggttgcttaccgccatccttgtcccacaaagcaacaccaggag 197
Query: 236 --atttttttctgacaccttaagctccccattgtgcagtctgagcccaggttgatcccta 293
| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 196 gga-------ctgacaccttaagctccccattgtgcagtctgagcccaggttgatcccta 144
Query: 294 accccacaggacaagttccaggctcaggtatgttggaaaagagctgccactggctatgct 353
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 143 accccacaggacaagttccaggctcaggtatgttggaaaagagctgccactggctatgct 84
Query: 354 cacagcgatggtgatgctgaagctactggagattatgatgtcagtgagcaagca 407
|||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 83 cacagcaatggtgatgctgaagctactggagattatgatgtcagtgagcaagca 30
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 409
Length of database: 809
Length adjustment: 9
Effective length of query: 400
Effective length of database: 800
Effective search space: 320000
Effective search space used: 320000
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no503_m11.g1 MSMg01no503_m11.g1 CHROMAT_FILE:
MSMg01no503_m11.g1 PHD_FILE: MSMg01no503_m11.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:31:10 2005
(436 letters)
>mm_chr18_80668028_80668863
Length = 836
Score = 797 bits (412), Expect = 0.0
Identities = 430/440 (97%), Gaps = 8/440 (1%)
Strand = Plus / Plus
Query: 1 agcctgatttacttcactgtttttcaaaacctggaccataattacctcatccattttcct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agcctgatttacttcactgtttttcaaaacctggaccataattacctcatccattttcct 260
Query: 61 ggctgagataggcttctttcagcttcaactttgttctctgatgagcagactctggtcaat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggctgagataggcttctttcagcttcaactttgttctctgatgagcagactctggtcaat 320
Query: 121 gctagtgaggctaaaacaaagaggcagttaagaggagagataagaggactgccagggcaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gctagtgaggctaaaacaaagaggcagttaagaggagagataagaggactgccagggcaa 380
Query: 181 gggtaattaacccctcgggaaggccagatttcccacgcttgcagaccttcatctg----t 236
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 381 gggtaattaacccctcgggaaggccagatttcccacgcttgcagaccttcatctgcaagt 440
Query: 237 ttttttgtatgccatggcctgtttcatgcatcaacttgtggctttaaaaacatgcttcga 296
|| |||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 441 tt----gtatgccatggcctgtttcatgcatcaacttgtgactttaaaaacatgcttcga 496
Query: 297 gcacatatcttataaaggtaagcgaacaccagcttggactgggctgtgatagatgtaaaa 356
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 gcacatatcttgtaaaggtaagcgaacaccagcttggactgggctgtgatagatgtaaaa 556
Query: 357 ctacatacaacatttctaaaataggaaaagcttcgtgacatcgggcttagcattgatttc 416
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 ctacatacaacatttctaaaataggaaaagcttcgtgacatcgggcttagcattgatttc 616
Query: 417 ttagcatgacagagatccac 436
||||||||||||||||||||
Sbjct: 617 ttagcatgacagagatccac 636
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 436
Length of database: 836
Length adjustment: 9
Effective length of query: 427
Effective length of database: 827
Effective search space: 353129
Effective search space used: 353129
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
