Query= MSMg01no504_j16.b1 MSMg01no504_j16.b1 CHROMAT_FILE:
MSMg01no504_j16.b1 PHD_FILE: MSMg01no504_j16.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:32:15 2005
(655 letters)
>mm_chr18_69580134_69581188
Length = 1055
Score = 1212 bits (627), Expect = 0.0
Identities = 645/651 (99%)
Strand = Plus / Plus
Query: 5 gaattctttggatcgcctaagtgctctcggtagcgggctgggttaccatctgctgtgttt 64
||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctttggattgactaagtgctctcggtagcgggctgggttaccatctgctgtgttt 264
Query: 65 tgtctccataggtcaggcttgttctcctagggaatggagaggtggggaaaaaatgccaat 124
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 265 tgtctccataggtcaggcttgttctcctagggaatggagaggtggggaaaaaatgccagt 324
Query: 125 aacctcactccaaaatgtatcctaactgtcttgttcacatttataggacagttttattgc 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 aacctcactccaaaatgtatcctaactgtcttgttcacatttataggacagttttattgc 384
Query: 185 tgtaggtaagacagagaactgggcattattccagcgtcttggcagttttccttttccaag 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tgtaggtaagacagagaactgggcattattccagcgtcttggcagttttccttttccaag 444
Query: 245 gtactaatattaggattagcgtgttgttttatagccattgcctttgtgcaccttataatt 304
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 445 gtactaatattaggattagcgtgttgttttaaagccattgcctttgtgcaccttataatt 504
Query: 305 gcttgttcttgagggacgtttggaacatttgggtttggctttcctgccaaatatgggaga 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 gcttgttcttgagggacgtttggaacatttgggtttggctttcctgccaaatatgggaga 564
Query: 365 ggatgtctcgcttactttaatactttgattgggtttttgagtcagtagtacgacagccca 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 ggatgtctcgcttactttaatactttgattgggtttttgagtcagtagtacgacagccca 624
Query: 425 ctttgcagcaggctaggcccagaatgtgtggagcagaggtagagtgggctgtgagcctgc 484
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 ttttgcagcaggctaggcccagaatgtgtggagcagaggtagagtgggctgtgagcctgc 684
Query: 485 aggtgggtcaccagggaaggtctactggtggtcttttggtgtcttccattgactttgtta 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 aggtgggtcaccagggaaggtctactggtggtcttttggtgtcttccattgactttgtta 744
Query: 545 ttgatatcaataccgaattattggcattgattgcaatgatttgcctcttctattgttttt 604
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 ttgatatcaataccgaattattggcattgattgcaatgatttgcctcttctattgttttt 804
Query: 605 aaatcaatctttgatggatcaaaagtacatgaaaacattccattacttagt 655
||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 805 aaatcaatcttcgatggatcaaaagtacatgaaaacattccattacttagt 855
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 655
Length of database: 1055
Length adjustment: 10
Effective length of query: 645
Effective length of database: 1045
Effective search space: 674025
Effective search space used: 674025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no504_j16.g1 MSMg01no504_j16.g1 CHROMAT_FILE:
MSMg01no504_j16.g1 PHD_FILE: MSMg01no504_j16.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:32:15 2005
(506 letters)
>mm_chr18_69755023_69755928
Length = 906
Score = 859 bits (444), Expect = 0.0
Identities = 478/506 (94%), Gaps = 26/506 (5%)
Strand = Plus / Minus
Query: 1 agtgctgggttgtcttcagaaggaaacctgtgccatagagggccacgctttaacagttca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 834 agtgctgggttgtcttcagaaggaaacctgtgccatagagggccacgctttaacagttca 775
Query: 61 agttggaaaacagtgctctctctctctctctctctctctctctctctctctctctctctc 120
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 774 agttggaaaacagtgctctctctctctctctctctctctctctctct------------- 728
Query: 121 tcacacacacacacacacacacacacacacacacgatacaaatagtcagacctcagacaa 180
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 727 -------------cacacacacacacacacacacgatacaaatagtcagacctcagacaa 681
Query: 181 acaaaattcacgaaaggtaaagccgctttcatagacatgttgaccaatcaatgcatgacg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 acaaaattcacgaaaggtaaagccgctttcatagacatgttgaccaatcaatgcatgacg 621
Query: 241 tacactatctccacaagatgtctggcatcaaaccaaacgcagctgaatgcagaagtagag 300
||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 tacacaatcgccacaagatgtctggcatcaaaccaaacgcagctgaatgcagaagtagag 561
Query: 301 gcagtacaatgcacactgtagaataaacaaaaatccctttccccgggggatgcacgaggg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 gcagtacaatgcacactgtagaataaacaaaaatccctttccccgggggatgcacgaggg 501
Query: 361 tgtcttggaaaatggtctagaactgggccttctgtggaccacacacaagtggactttgct 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 tgtcttggaaaatggtctagaactgggccttctgtggaccacacacaagtggactttgct 441
Query: 421 ggctatgtcaccaagttaaatctaagcactggtgaccatccgtggtttccacggtttctg 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 ggctatgtcaccaagttaaatctaagcactggtgaccatccgtggtttccacggtttctg 381
Query: 481 ctgaggctccacatggctattttccc 506
||||||||||||||||||||||||||
Sbjct: 380 ctgaggctccacatggctattttccc 355
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 53
Number of extensions: 13
Number of successful extensions: 13
Number of sequences better than 10.0: 1
Number of HSP's gapped: 8
Number of HSP's successfully gapped: 1
Length of query: 506
Length of database: 906
Length adjustment: 10
Effective length of query: 496
Effective length of database: 896
Effective search space: 444416
Effective search space used: 444416
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
