Query= MSMg01no504_k15.b1 MSMg01no504_k15.b1 CHROMAT_FILE:
MSMg01no504_k15.b1 PHD_FILE: MSMg01no504_k15.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:32:20 2005
(688 letters)
>mm_chr18_86428164_86429251
Length = 1088
Score = 1268 bits (656), Expect = 0.0
Identities = 677/684 (98%)
Strand = Plus / Plus
Query: 5 gaattctttgtttacctctgagccccattttttaatggggttatttgattttctgaagtc 64
|||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctttgttcagttctgagccccattttttaatggggttatttgattttctgaagtc 264
Query: 65 caccttcttgagttctttatatatgttggatattagtcccctatctgatttaggatatgt 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 265 caccttcttgagttctttatatatgttggatattagtcccctatctgatttaggataggt 324
Query: 125 aaagatcctttcccaatctgttggtggtctctttgtcttattgacggtgtcttttgcctt 184
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 325 aaagatcctttcccaatctgttggtggtctctttgtcttattgaaggtgtcttttgcctt 384
Query: 185 gcagaaactttggagtttcattaggtcccatttgtcaattctcgatcttacagcacaagc 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gcagaaactttggagtttcattaggtcccatttgtcaattctcgatcttacagcacaagc 444
Query: 245 cattgctgttctgttcaggaatttttcccctgtgcccatatcttcaaggcttttccccac 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 cattgctgttctgttcaggaatttttcccctgtgcccatatcttcaaggcttttccccac 504
Query: 305 tttctcctctataagtttcagtgtctctggttttatgtgaagttctttgatccatttaga 364
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 ttactcctctataagtttcagtgtctctggttttatgtgaagttctttgatccatttaga 564
Query: 365 tttgaccttagtacaaggagataagtatggatcgatccatacttatctcctcctttcatc 424
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 565 tttgaccttagtacaaggagataagtatggatcgatccatacttatctccttctttcatc 624
Query: 425 ttaaaagaacatagttaaaagatatcttatacttcaatagtgattctggagccaaacaga 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 ttaaaagaacatagttaaaagatatcttatacttcaatagtgattctggagccaaacaga 684
Query: 485 ctaggcaccactgggttggttaacacaatgactcaagaatgtctctcttctttctgagta 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 ctaggcaccactgggttggttaacacaatgactcaagaatgtctctcttctttctgagta 744
Query: 545 ggctttttgacttgcatatgctttttgctgccaagagaaggagtaattatttacctgcct 604
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 ggctttttgacttgcatatgctttttgctgccaagagaaggagtaattatttacctgcct 804
Query: 605 atccccttggtagttcacaggacatacattgtaatccaagtttctattatagatgcagac 664
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 805 atccccttggtagttcacaggacatacattgtaatccaagtttctattatagatgcagac 864
Query: 665 aactcttatttattactcttgtag 688
||||||||||||||||||||||||
Sbjct: 865 aactcttatttattactcttgtag 888
Score = 72.3 bits (37), Expect = 1e-16
Identities = 37/37 (100%)
Strand = Plus / Minus
Query: 379 aaggagataagtatggatcgatccatacttatctcct 415
|||||||||||||||||||||||||||||||||||||
Sbjct: 616 aaggagataagtatggatcgatccatacttatctcct 580
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 2
Length of query: 688
Length of database: 1088
Length adjustment: 10
Effective length of query: 678
Effective length of database: 1078
Effective search space: 730884
Effective search space used: 730884
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no504_k15.g1 MSMg01no504_k15.g1 CHROMAT_FILE:
MSMg01no504_k15.g1 PHD_FILE: MSMg01no504_k15.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:32:20 2005
(514 letters)
>mm_chr18_86563445_86564358
Length = 914
Score = 903 bits (467), Expect = 0.0
Identities = 505/523 (96%), Gaps = 9/523 (1%)
Strand = Plus / Minus
Query: 1 cccactgcatctcagtggagggtgaaaggcgtggaagggggaggggccatcatgc----- 55
||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 778 cccactgcatctcagtggagggtgaaaggcgtggaagagggaggggccatcatgcaaaaa 719
Query: 56 ----aaaaaaaaaaatgcccctttgagttagggttttcactttttaaaggttagaaatga 111
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 718 aaaaaaaaaaaaaaatgcccctttgagttggggttttcactttttaaaggttagaaatga 659
Query: 112 ctgtctcccgtccctccaactggagctttcgagtcccctctcttctaaagggtgaataaa 171
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 658 ctgtcttccgtccctccaactggagctttcgagtcccctctcttctaaagggtgaataaa 599
Query: 172 tacttcaccctctagccagctggtctaagagcgaaagcccaggcgctggaagaaaaagga 231
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 598 tacttcaccctctagccagctggtctaagagcgaaagcccgggcgctggaagaaaaagga 539
Query: 232 aagcagcggtaaaagtttcacgtttaatcactagaggagattcgctggagaatcacccca 291
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 538 aagcagcggtaaaagtttcacgtttaatcactagaggagattcgctggagaatcacccca 479
Query: 292 aactgctactgcaaatacgcagtcccttaaaatgtgcttttctgtcggaaaaatactcaa 351
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 478 aactgctactgtaaatacgcagtcccttaaaatgtgcttttctgtcggaaaaatactcaa 419
Query: 352 aatcgtccaaaagcaaacacagatcaccccaccctaatacatccaaacgcgcgcgcgctg 411
||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 418 aatcgtctaaaagcaaacacagatcaccccaccctaatacatccaaacgctcgcgcgctg 359
Query: 412 ggcgggtgaaactcacaggagaaaggagttgctggaaaacagcaggaagagcctccaatt 471
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 358 ggcgggtgaaactcacaggagaaaggagttgctggaaaacagcaggaagagcccccaatt 299
Query: 472 cggaaaattacgaataggtgaatgcgaaatcacagtaaacacg 514
|||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 298 cggaaaattacggataggtgaatgcgaaatcacagtaaacacg 256
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 514
Length of database: 914
Length adjustment: 10
Effective length of query: 504
Effective length of database: 904
Effective search space: 455616
Effective search space used: 455616
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
