Query= MSMg01no504_l21.b1 MSMg01no504_l21.b1 CHROMAT_FILE:
MSMg01no504_l21.b1 PHD_FILE: MSMg01no504_l21.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:32:26 2005
(564 letters)
>mm_chr18_59591646_59592609
Length = 964
Score = 1067 bits (552), Expect = 0.0
Identities = 561/564 (99%)
Strand = Plus / Minus
Query: 1 caggctggaaacttaaaaagacttcttctggtccaatagcagtgtttattgaggattcat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 764 caggctggaaacttaaaaagacttcttctggtccaatagcagtgtttattgaggattcat 705
Query: 61 cagtgggtagaaaaactagcaactctagcctccaccttctgaatgtttataaagtgagac 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 704 cagtgggtagaaaaactagcaactctagcctccaccttctgaatgtttataaagtgagac 645
Query: 121 tgctgtctacagagaccacctaccaagactagttaatcagtggccctgtactaaataata 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 644 tgctgtctacagagaccacctaccaagactagttaatcagtggccctgtactaaataata 585
Query: 181 tataatctggtccaagttctgggtttcttcacttttggatgtagcctatcaaagcccaca 240
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 584 tataatctggtccaagttctgggtttcttcacttgtggatgtagcctatcaaagcccaca 525
Query: 241 accaccctgaacccatctttttctctctgcatgtctgtctgtcctttcttcattcccttg 300
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 524 accaccctgaacccagctttttctctctgcatgtctgtctgtcctttcttcattcccttg 465
Query: 301 ccaccagagttaggttccagacccaagctacagtagtaggataaggcaactgagcagagt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 464 ccaccagagttaggttccagacccaagctacagtagtaggataaggcaactgagcagagt 405
Query: 361 cccattaggtaaagacaatgagtatggagagcaagaagcacaatggggatgtgaatgata 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 404 cccattaggtaaagacaatgagtatggagagcaagaagcacaatggggatgtgaatgata 345
Query: 421 agtatctgagttttgtagatctttagcttgacctgttagtttaggatggcaggaagcagg 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 344 agtatctgagttttgtagatctttagcttgacctgttagtttaggatggcaggaagcggg 285
Query: 481 ccatgatattgttatttaagccaagaccagaatccctacttagcaattcctgtttaattg 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 284 ccatgatattgttatttaagccaagaccagaatccctacttagcaattcctgtttaattg 225
Query: 541 tgacattggctgtttggtacacag 564
||||||||||||||||||||||||
Sbjct: 224 tgacattggctgtttggtacacag 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 564
Length of database: 964
Length adjustment: 10
Effective length of query: 554
Effective length of database: 954
Effective search space: 528516
Effective search space used: 528516
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no504_l21.g1 MSMg01no504_l21.g1 CHROMAT_FILE:
MSMg01no504_l21.g1 PHD_FILE: MSMg01no504_l21.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:32:26 2005
(589 letters)
>mm_chr18_59473618_59474605
Length = 988
Score = 1040 bits (538), Expect = 0.0
Identities = 577/590 (97%), Gaps = 4/590 (0%)
Strand = Plus / Plus
Query: 1 aattcccagcaaccacatggtggctcacaatcatctgtaatggaataaaaatgacctctt 60
|||||||||||||||||||||||||||||| ||||||||||||||||||| || ||||||
Sbjct: 202 aattcccagcaaccacatggtggctcacaaccatctgtaatggaataaaa-tgccctctt 260
Query: 61 ctggtgggtctgaagaaagcaaaagtgaacccatatacctaaaataaataaataaatctt 120
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctggtgtgtctgaagaaagcaaaagtgaacccatatacctaaaataaataaataaatctt 320
Query: 121 taaaaaatgtcttcctggttgctgtgggaagtcagatgaagtccactagaattttttttt 180
||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 321 taaaaaatgacttcctggttgctgtgggtagtcagatgaagtccactagaatttttttt- 379
Query: 181 cttcccacagtgtatttctgtaaaacacggtgttttataataaacatgttatttttgttc 240
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 380 cttcccacagtgtatttctgtaaaaca-ggtgttttataataaacatgttatttttgttc 438
Query: 241 ataatattttgacctttttcttagaataatatgataatatctaggagttggaatgcaatt 300
||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||
Sbjct: 439 ataatattttgacctttttcttagaataaaatgataatatctagaagttggaatgcaatt 498
Query: 301 atctaattccttaatataaaccttggtaaataaccaaatcagaaagtcatggcatgctaa 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 atctaattccttaatataaaccttggtaaataaccaaatcagaaagtcatggcatgctaa 558
Query: 361 ccttagcatgtttgcttctctttttataaccactgatgagaatttatcatccccagtgaa 420
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 559 ccttagcatgtttgcttctctttttataaccactgatgagcatttatcatccccagtgaa 618
Query: 421 ggtgtatcgaattattatgatggagaattccaattaaaaccccccaaaactttagaacag 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 ggtgtatcgaattattatgatggagaattccaattaaaaccccccaaaactttagaacag 678
Query: 481 attgacgaccttttactcatgtgttctataaaaagaactttgaatgaaga-tagcgactt 539
||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||
Sbjct: 679 attgacgaccttttactcatgtgttctataaaaagaactctgaatgaagaatagcgactt 738
Query: 540 actgataattgcatggaattcatagcttttcaaaagcaggcattctatat 589
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 739 actgataattgcatggaattcatagcttttcaaaagcaggcattctatat 788
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 5
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 589
Length of database: 988
Length adjustment: 10
Effective length of query: 579
Effective length of database: 978
Effective search space: 566262
Effective search space used: 566262
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
