BAC Information

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BAC

Clone NameMSMg01-505N23
Chromosome18 (Build37)
Map Location 7,579,862 - 7,580,188
singlet/doubletsinglet
Overlap geneMpp7
Upstream gene4921524L21Rik, LOC100039583, EG665053, Rab18, LOC620787, LOC100039635, Mkx, LOC664778, Armc4
Downstream geneEG622384, LOC100039562, LOC100039606, Wac, LOC665121, LOC225134, LOC665132, EG433158
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-505N23.T7 (MSMg01no505_n23.b1)MSMg01-505N23.TJ (MSMg01no505_n23.g1)
ACCAG580403AG580404
length751765
length of high quality
(start - end)		585 (50 - 634)613 (71 - 683)
definitionCHROMAT_FILE: MSMg01no505_n23.b1 PHD_FILE: MSMg01no505_n23.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:33:53 2005CHROMAT_FILE: MSMg01no505_n23.g1 PHD_FILE: MSMg01no505_n23.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:33:53 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NAACCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCAAGGTTCACACCTAAACATGATAAAAGCAATCTACAGCAAA
CCAGTAGCCAACATCAAAGTAAATGGAGAGAAGCTGGAAGCAATCCCACT
AAAATCAGGGACTAGACAAGGCTGCCCACTTTCTCCCTACCTTTTCAACA
TAGTACTTGAAGTATTAGCCAGAGCAATTTGACAACAAAAGGAGATCAAG
GGGATACAAATTGGAAAGGAAGAAGTCAAAATATCACTTTTTGCAGATGA
TATGATAGTATATATAAGTGACCCTAAAAATTCCACCAGAGAACTCCTAA
ACCTGATAAACAGCTTCAGTGAAGTAGCTGGATATAAAATTAACTCAAAC
AAGTCAATGGCCTTTCTGTACACAAAGAATAAACAGGCTGAGAAAGAAAT
TAGGGAAACAACACCCTTCTCAATAGTCACAAATAATATAAAATATCTCA
GCGTGACTCTAACAAAGGAAGTGAAAGATCTGTATGATAAAAACTTCAAG
TCTCTGAAGAAAGAAATTAAAGAAGATCTCAGAAGATGGAAAGATCTCCC
ATGCTCATGGATTGGCAGGATCAACATTGTAAAAATGGCTATCTTGCCAA
AAGCAATCTACCGATTCAATGCAATCCCCCTGGAAAATTAACAACCACAT
TCTTTTCACGAAAATTAAAAAGGGGAACCGGGAAATATACTTTGGGAAAA
A

NCACGATGAAGTGGGAGGCCTGGCGGCCGCCTGTTCTAAACAGGAGGTGA
ACTATAGATTTCCCCGCGGAATTCTTCTCAGCAAGTCCCTCTCCTATTGT
CATGTCTTCTTTGTGAGTGCAGTTAGAGTCTCTTGACTAAGTGTGGGCTG
GGAGTATTTCTCAGCAACTATACCACTGAACAGGACAGTACTTTCTCCAA
CCATCCTGTCAACAACGGTTCCTCAGGAAGAGGTAGGCGCCTCCTGTCCC
CTGCCCAGGTCAGGGTGGAATGCTGTGGGGCTTGTGCATGTATCTATTGC
TGCAGTGTATTCCTGAGTGACTGGCTGTGTCATGCCCAGAAGACATATCC
CTGTTCCTTACCTCCCCATCATCTTGCCTCTTGTTATCATCTCCACTCTT
CCACAGTGTCCCCTGAGCCTAGGAATGGTGAATCTTAGAGTCTCATTTGG
GGCCACGGGATGGATGGTAGATCATAGCTGTCTCATCCCGGGCCAAGACC
TTGGCCATCACTTATTCTCTGGTCTCAGGGAATTGTGGGTCCTGCAGACC
CCAGGCCTACTTCAGTAGGCATCTCCTCTGTTGAAGGGTGGTGCAGCACT
CACCAACACTGCAACACTGACAGCCTATGGCTAGAGCTTGCACTGGTATG
GTATGATTCCTACCTCCTCTTTTTTTGAATAGAGGAGATGTTTTCTCATA
TAAGGCCCATATTGGATATTTACTTTAAAAATCCTTATATATTAAGGCTT
AACACTTCATCTGAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no505_n23.g1 MSMg01no505_n23.g1 CHROMAT_FILE:
MSMg01no505_n23.g1 PHD_FILE: MSMg01no505_n23.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:33:53 2005
         (613 letters)



>mm_chr18_7579862_7580874
          Length = 1013

 Score =  601 bits (311), Expect = e-176
 Identities = 323/327 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   attcttctcagcaagtccctctcctattgtcatgtcttctttgtgagtgcagttagagtc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 attcttctcagcaagtccctctcctattgtcatgtcttctttgtgagtgcagttagagtc 268

                                                                       
Query: 61  tcttgactaagtgtgggctgggagtatttctcagcaactataccactgaacaggacagta 120
           ||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||  
Sbjct: 267 tcttgactaagtgtgggctgggagtatttctcagcgactatatcactgaacaggacagcg 208

                                                                       
Query: 121 ctttctccaaccatcctgtcaacaacggttcctcaggaagaggtaggcgcctcctgtccc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 207 ctttctccaaccatcctgtcaacaacggttcctcaggaagaggtaggcgcctcctgtccc 148

                                                                       
Query: 181 ctgcccaggtcagggtggaatgctgtggggcttgtgcatgtatctattgctgcagtgtat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 147 ctgcccaggtcagggtggaatgctgtggggcttgtgcatgtatctattgctgcagtgtat 88

                                                                       
Query: 241 tcctgagtgactggctgtgtcatgcccagaagacatatccctgttccttacctccccatc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 87  tcctgagtgactggctgtgtcatgcccagaagacatatccctgttccttacctccccatc 28

                                      
Query: 301 atcttgcctcttgttatcatctccact 327
           |||||||||||||||||||||||||||
Sbjct: 27  atcttgcctcttgttatcatctccact 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 613
Length of database: 1013
Length adjustment: 10
Effective length of query: 603
Effective length of database: 1003
Effective search space:   604809
Effective search space used:   604809
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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