Query= MSMg01no506_b23.b1 MSMg01no506_b23.b1 CHROMAT_FILE:
MSMg01no506_b23.b1 PHD_FILE: MSMg01no506_b23.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:34:12 2005
(626 letters)
>mm_chr18_23769029_23770053
Length = 1025
Score = 1096 bits (567), Expect = 0.0
Identities = 609/623 (97%), Gaps = 3/623 (0%)
Strand = Plus / Minus
Query: 5 gaattctgagac-ctttggtgtgaagtatccacgacaacattagaaaagatttggttgac 63
|||||||||||| | |||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 825 gaattctgagacacagtggtgtgaagtatccaggacaacattagaaaagatttggttgac 766
Query: 64 tgacctaggagaaaagttcctggttcacgtctggcttgcagcactttagctcttggctag 123
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||
Sbjct: 765 tgacctaggagaaaagttcctggttcacgtctggcttgcagcactttagctcctggccag 706
Query: 124 gactgcttgtcagtaacccaggctgttcccctctgtagggataggctagcagtcaagtct 183
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 705 gactgcttgtcagtaaccca-gctgttcccctctgtagggataggctagcagtcaagtct 647
Query: 184 acccatgatgcactaaccatggtgggttgttccggagcatgttgacatacaacccaatga 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 646 acccatgatgcactaaccatggtgggttgttccggagcatgttgacatacaacccaatga 587
Query: 244 gaacatgttcatcagctagcctgtctgccacattcaggctgtactgtatcctaaaatggg 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 586 gaacatgttcatcagctagcctgtctgccacattcaggctgtactgtatcctaaaatggg 527
Query: 304 gtagagggaaagaagaattgagagaagtggacagaaacaagcagagtttgtggtaggaaa 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 526 gtagagggaaagaagaattgagagaagtggacagaaacaagcagagtttgtggtaggaaa 467
Query: 364 agcacacagagaaccaagcaagtaaaggaagactaaatgtgacgatctatgaaaaacaca 423
||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||
Sbjct: 466 agcacacagagaaccaagcaagtaaaggaagactaaatgtgacgatctatggaaagcaca 407
Query: 424 agccaaacacaggtaagggagtccacaacttcaatctactagctttcaaaacatcaagca 483
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 406 agccaaacccaggtaagggagtccacaacttcaatctactagctttcaaaacatcaagca 347
Query: 484 tatttttagaaaaaatatttgcattctttgaccacaaagaccaaggaattttctcccatg 543
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 346 tatttttagaaaaaatatttgcattctttgaccacaaagaccaaggaattttct-ccatg 288
Query: 544 ggaaacatatcagaacatattacaataaagcttaaatatcttctgaatagttgggttata 603
|||||||||||||||||||||||||||||| |||||||||||||| ||||||| ||||||
Sbjct: 287 ggaaacatatcagaacatattacaataaagtttaaatatcttctggatagttgagttata 228
Query: 604 caattaaattatataaattacaa 626
|||||||||||||||||||||||
Sbjct: 227 caattaaattatataaattacaa 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 4
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 626
Length of database: 1025
Length adjustment: 10
Effective length of query: 616
Effective length of database: 1015
Effective search space: 625240
Effective search space used: 625240
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no506_b23.g1 MSMg01no506_b23.g1 CHROMAT_FILE:
MSMg01no506_b23.g1 PHD_FILE: MSMg01no506_b23.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:34:12 2005
(612 letters)
>mm_chr18_23602390_23603401
Length = 1012
Score = 1058 bits (547), Expect = 0.0
Identities = 597/625 (95%), Gaps = 20/625 (3%)
Strand = Plus / Plus
Query: 1 accatttatttcatcaacatctattatctacttggtccccgtgtagaactctttagctat 60
|||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||
Sbjct: 195 accatttatttcatcaacatctattatctactcggtccccatgtagaactctttagctat 254
Query: 61 gtatggtttatgacatcatgtgtttgtggcttgggaagtgggtttactcagtcaaattct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 255 gtatggtttatgacatcatgtgtttgtggcttgggaagtgggtttactcagtcaaattct 314
Query: 121 ttcacttgacattttctacttcacaacaacaaaatcacgcttctttttaatatcattaac 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 315 ttcacttgacattttctacttcacaacaacaaaatcacgcttctttttaatatcattaac 374
Query: 181 aatcttattagaaatgactgtttagttttgggaagggccttgtagtcttggtagcagatg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 375 aatcttattagaaatgactgtttagttttgggaagggccttgtagtcttggtagcagatg 434
Query: 241 tagttattccaagattctatttttgcttaacaatatccatctgtatcataggcagcatat 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 435 tagttattccaagattctatttttgcttaacaatatccatctgtatcataggcagcatat 494
Query: 301 gttgccatttgtctcac------agctcacttcattcattttcagaaaggaaagggatga 354
||||||||||||||||| ||||||||||||||||||||||||||||||| |||||
Sbjct: 495 gttgccatttgtctcacggtgacagctcacttcattcattttcagaaaggaaagagatga 554
Query: 355 agcccgtgggcttgaatcattttggcttgctggtcttctttatgtaaacacaatgttgta 414
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 555 agcccgtgggcttgaatcattttggcttgctggtcttctttatgtaaacacaatgttgta 614
Query: 415 gaagacgtcactaacccagttcagcatctttgcatgaaccctccgtgtttatgagcagct 474
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 615 gaagacgtcactagcccagttcagcatctttgcatgaaccctccgtgtttatgagc---- 670
Query: 475 acccaagatcaacataattagcacaagtcctcagtgtgcctgggc-------ccagttca 527
|||| ||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 671 ---caagttcaacataattagcacaagtcctcagtgtgcctgggcagctggcccagttca 727
Query: 528 cggggatttacacatgagcatgagcaatctccaacatgggtggacatcaagtgctttatc 587
|| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 728 tggtgatttacacatgagcatgagcaatctccaacatgggtggacaacaagtgctttatc 787
Query: 588 tagctttcctgtttcagcatacaaa 612
|||||||||||||||||||||||||
Sbjct: 788 tagctttcctgtttcagcatacaaa 812
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 612
Length of database: 1012
Length adjustment: 10
Effective length of query: 602
Effective length of database: 1002
Effective search space: 603204
Effective search space used: 603204
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
