Query= MSMg01no507_c05.b1 MSMg01no507_c05.b1 CHROMAT_FILE:
MSMg01no507_c05.b1 PHD_FILE: MSMg01no507_c05.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:35:34 2005
(729 letters)
>mm_chr18_89828593_89829721
Length = 1129
Score = 1384 bits (716), Expect = 0.0
Identities = 722/724 (99%), Gaps = 1/724 (0%)
Strand = Plus / Minus
Query: 5 gaattctatgtttagttctcacaccctattttttgattgagttgtttatatttttggata 64
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 1103 gaattctatgtttagttct-acaccctattttttgattgagttgtttatatttttggata 1045
Query: 65 ttaaaaaatatccaaagtgcttcttgagctctttatatattttggatataagccctctat 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1044 ttaaaaaatatccaaagtgcttcttgagctctttatatattttggatataagccctctat 985
Query: 125 cagatgtagggttagtgaagattttttccccaatctgtaggtttccaatctttcctctga 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 984 cagatgtagggttagtgaagattttttccccaatctgtaggtttccaatctttcctctga 925
Query: 185 aaataaatattgtttcataattgcattattttataataattccaatatattatcttattc 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 924 aaataaatattgtttcataattgcattattttataataattccaatatattatcttattc 865
Query: 245 atcttaaaattcattctttattgttgtatgtaattacactttttacattaaagtgctact 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 864 atcttaaaattcattctttattgttgtatgtaattacactttttacattaaagtgctact 805
Query: 305 tcatgtgtcttattcctctatttatgaacatttagaatttgtacaaatttaaatgccaag 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 804 tcatgtgtcttattcctctatttatgaacatttagaatttgtacaaatttaaatgccaag 745
Query: 365 gaaaatgctattgcaatatttgcattatatctgcagatattaacacagaggaaaagaatt 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 gaaaatgctattgcaatatttgcattatatctgcagatattaacacagaggaaaagaatt 685
Query: 425 gacaagtacataaaacattaaataacatctgaagacccctagttcagcatatatgaaaaa 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 gacaagtacataaaacattaaataacatctgaagacccctagttcagcatatatgaaaaa 625
Query: 485 aatgattcccaagtattggtagccaccaataaacaaatattattttcactgtggggcaat 544
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 624 aatgattcccaagtattggtagccaccaataaacaaatgttattttcactgtggggcaat 565
Query: 545 tcctgactagattctatgtccagtgagaccactttatgtttgcataaggaaaacaaaaca 604
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 tcctgactagattctatgtccagtgagaccactttatgtttgcataaggaaaacaaaaca 505
Query: 605 ctagtgtcttagttattcaatttttaaaattatctttgtttgtgtgagagaggatgcaca 664
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 ctagtgtcttagttattcaatttttaaaattatctttgtttgtgtgagagaggatgcaca 445
Query: 665 tgcagaaacatgtacatgtgatagccagagatctatattttagatctttttcattcactc 724
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 tgcagaaacatgtacatgtgatagccagagatctatattttagatctttttcattcactc 385
Query: 725 tata 728
||||
Sbjct: 384 tata 381
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 44
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 729
Length of database: 1129
Length adjustment: 10
Effective length of query: 719
Effective length of database: 1119
Effective search space: 804561
Effective search space used: 804561
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no507_c05.g1 MSMg01no507_c05.g1 CHROMAT_FILE:
MSMg01no507_c05.g1 PHD_FILE: MSMg01no507_c05.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:35:34 2005
(639 letters)
>mm_chr18_89687872_89688910
Length = 1039
Score = 1151 bits (595), Expect = 0.0
Identities = 628/639 (98%)
Strand = Plus / Plus
Query: 1 ttcttaactgaggaatattgaatagcagagaagcacctaaagaaatgtccaatatcttta 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttcttaactgaggaatattgaatagcagagaagcacctaaagaaatgtccaatatcttta 260
Query: 61 gtcatcagggaaatgcgaatcaaaacaacccttagattccacctcacagcagtcagaatg 120
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtcatcagggaaatgcaaatcaaaacaacccttagattccacctcacagcagtcagaatg 320
Query: 121 gccaagaacaaaaactcagttgacaggagttgctggaggggatgtggagaaagaagaacc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gccaagaacaaaaactcagttgacaggagttgctggaggggatgtggagaaagaagaacc 380
Query: 181 ccctcgtcataaaagtaaataaagaaagaaacaaaaacatttttttagcaagcaattatt 240
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cccttgtcataaaagtaaataaagaaagaaacaaaaacatttttttagcaagcaattatt 440
Query: 241 ctgacaccttattggtggaggttggcatgtttaaagtaaaacggtagtaagagaatacct 300
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 441 ctgacaccttattggtggaggttggcatgtttaaagtaaaacgatagtaagagaatacct 500
Query: 301 acaatatttagtaaaaagcattcagcaagagacatgattattgaatggaattatttatct 360
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 501 acaatatttagtaaaaagcattcagcaagagacatgattattgaatgggattatttatct 560
Query: 361 gaaaatccatgtcataagaaaaaaaagattttaatttcttagtctttagttcaaataaaa 420
|||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||
Sbjct: 561 gaaaatccatgtcataagaaaaaaaagattttaacatcttagtctttaattcaaataaaa 620
Query: 421 atacccatctcttccctttaaagaatcatgattctccataaaagaataccatctgtgagt 480
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 atacctatctcttccctttaaagaatcatgattctccataaaagaataccatctgtgagt 680
Query: 481 caaacatcccctctctcttgtaccctcatctcttggatctacagtttgcctctatcacct 540
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 caagcatcccctctctcttgtaccctcatctcttggatctacagtttgcctctatcacct 740
Query: 541 ttatcaaactcatagatatataaacttatgttgcaaatagaaacattttgtttgctacta 600
|| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 ttttcaaagtcatagatatataaacttatgttgcaaatagaaacattttgtttgctacta 800
Query: 601 gccttgtggatataacctaaggtcctgctacttgagacc 639
|||||||||||||||||||||||||||||||||||||||
Sbjct: 801 gccttgtggatataacctaaggtcctgctacttgagacc 839
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 639
Length of database: 1039
Length adjustment: 10
Effective length of query: 629
Effective length of database: 1029
Effective search space: 647241
Effective search space used: 647241
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
