BAC Information

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BAC

Clone NameMSMg01-507E21
Chromosome18 (Build37)
Map Location 71,613,226 - 71,781,582
singlet/doubletdoublet
Overlap geneDcc
Upstream gene4930503L19Rik, Stard6, Poli, Mbd2, EG668032
Downstream geneLOC629684
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-507E21.T7 (MSMg01no507_e21.b1)MSMg01-507E21.TJ (MSMg01no507_e21.g1)
ACCAG581488AG581489
length760772
length of high quality
(start - end)		711 (50 - 760)557 (81 - 637)
definitionCHROMAT_FILE: MSMg01no507_e21.b1 PHD_FILE: MSMg01no507_e21.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:35:48 2005CHROMAT_FILE: MSMg01no507_e21.g1 PHD_FILE: MSMg01no507_e21.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:35:48 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(71,780,877 - 71,781,582)(71,613,226 - 71,613,778)
sequence
NNAATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCTCCTAGAGTCTATAATCATTGCAGTCCATAGCAGAGGCTGC
TGGCGATAAGATGAGCATAAGCAAGAATGTGTTGCTAAACATACTTAACA
ATTTCCATTTTCAGGAAACCTTTTAACTGAATGACTTAAAATGAGTTAAA
TCTCTAGCATACCATAATTCGTTTTTCCAACTCAATCCATCAATTAATGG
CTAGCCTAACACATTAAAAATCATAATTTGTAGAAAGTTAATATCTTCTG
AAATTAATTTCCAATTTAAGAATGAAGAATTTATATAATATAGTCGTCAG
ATACAAACTGGTTGAAAACTGTATCATGTTTGTGACAATCAATGAAAATC
TTTAGGGTCAATATGGTTGTTAAATCTACAATGTGTTCACCCTGTGACAA
GGAGAAATAGTGGAAACCATGTCTTGTCTCTTTGACCTCTCCAGCCTTGT
GATAGTACTGGAAGTCACATTTTATGTGAGTAGTCTTATGATACCACAGG
AAGTCACATTCTTTGTGAATAGTGTCATGATTTCACAGGAAGTTACTTTC
TGTGTAAATTCCTTATGACAGTCAGATACTGTTCATATCCAAGGAACCAG
TTCAATTGTGAGACTGCTCAAATTGCTCAGTGCTCACATACTATGTGCAT
GCTTCCTTCAGGTCCCTGAATATGATATAACCCCTAGAGAAATCATCATT
TGCATTGTTN

AAAATGCGATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCATTGCATTAAGCTGTGGAG
GGGAAAACCAAAGCAATAGAGAGCTGGGATGTTGTTTATGGCAGAGACAT
TAATGGTGTGGAAAGCTGAGGTAAGGAATAAATAGAACAAGCAAAGAAGG
AGTACCTTATGCTTGCAGCTTGTAGAGGAGTTAGATGTGTGGGGCTACCC
AAGCATGATGGAGACTAACGATGTCTCTAGGAGTTCTAGATGCTGGCCAT
GGAGCTGAAGAATTTGGTGGTTGTCTTTCTCTGCTTGATCTTGCTTGAAG
TTGATCTTTTATTATTATATACCACAAATTCCTTCTTATAACAGAAGTAC
TTATTCTTTCTTTATTTTTTATTTTTATTTTTTACTCCAGATTTTATTCC
CCTCCGGGTCTACCCTCTGACTGTTTCATATCCCATACCTCCTCCCCTCC
CCTTGTCTCCTTTATAATCATGTAGAAGTACATTTTTATTCACTAAAAGA
TGAAGGCAACTTATTGAAGGTTTACTCATGTTTCCTTAAAACACAATAGA
TAATTTCATTTTCCCATAATATGTGTTTAAAAATTCCAGTGGCCAATGAG
AAACATGTTACTACTAAAACACACACACACACACACACTCGGAAAAAAAA
GAAAAGAGAATATCCTATTTATGAAAGGGTAGAATAGAAAGTGGACATCC
TAGGAGAGGAAAAGTCTGAGAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no507_e21.b1 MSMg01no507_e21.b1 CHROMAT_FILE:
MSMg01no507_e21.b1 PHD_FILE: MSMg01no507_e21.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:35:48 2005
         (711 letters)



>mm_chr18_71780673_71781783
          Length = 1111

 Score = 1342 bits (694), Expect = 0.0
 Identities = 703/706 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctcctagagtctataatcattgcagtccatagcagaggctgctggcgataagatg 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 910 gaattctcctagagtctataatcattgcagtccatagcagaggctgctggcgataagatg 851

                                                                       
Query: 65  agcataagcaagaatgtgttgctaaacatacttaacaatttccattttcaggaaaccttt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 850 agcataagcaagaatgtgttgctaaacatacttaacaatttccattttcaggaaaccttt 791

                                                                       
Query: 125 taactgaatgacttaaaatgagttaaatctctagcataccataattcgtttttccaactc 184
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 790 taactgaatgacttaaaatgagttaaatctctagcataccataattcatttttccaactc 731

                                                                       
Query: 185 aatccatcaattaatggctagcctaacacattaaaaatcataatttgtagaaagttaata 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 730 aatccatcaattaatggctagcctaacacattaaaaatcataatttgtagaaagttaata 671

                                                                       
Query: 245 tcttctgaaattaatttccaatttaagaatgaagaatttatataatatagtcgtcagata 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 670 tcttctgaaattaatttccaatttaagaatgaagaatttatataatatagtcgtcagata 611

                                                                       
Query: 305 caaactggttgaaaactgtatcatgtttgtgacaatcaatgaaaatctttagggtcaata 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 610 caaactggttgaaaactgtatcatgtttgtgacaatcaatgaaaatctttagggtcaata 551

                                                                       
Query: 365 tggttgttaaatctacaatgtgttcaccctgtgacaaggagaaatagtggaaaccatgtc 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 550 tggttgttaaatctacaatgtgttcaccctgtgacaaggagaaatagtggaaaccatgtc 491

                                                                       
Query: 425 ttgtctctttgacctctccagccttgtgatagtactggaagtcacattttatgtgagtag 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 490 ttgtctctttgacctctccagccttgtgatagtactggaagtcacattttatgtgagtag 431

                                                                       
Query: 485 tcttatgataccacaggaagtcacattctttgtgaatagtgtcatgatttcacaggaagt 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 430 tcttatgataccacaggaagtcacattctttgtgaatagtgtcatgatttcacaggaagt 371

                                                                       
Query: 545 tactttctgtgtaaattccttatgacagtcagatactgttcatatccaaggaaccagttc 604
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 370 tactttctgtgtaaattccttatgacagtcagatactgttcatacccaaggaaccagttc 311

                                                                       
Query: 605 aattgtgagactgctcaaattgctcagtgctcacatactatgtgcatgcttccttcaggt 664
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 310 aattgtgagactgctcaaattgctcagtgctcacatactatgtgcatgcttccttcaggt 251

                                                         
Query: 665 ccctgaatatgatataacccctagagaaatcatcatttgcattgtt 710
           |||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 250 ccctgaatatgatataacccctagagtaatcatcatttgcattgtt 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 711
Length of database: 1111
Length adjustment: 10
Effective length of query: 701
Effective length of database: 1101
Effective search space:   771801
Effective search space used:   771801
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)

Query= MSMg01no507_e21.g1 MSMg01no507_e21.g1 CHROMAT_FILE:
MSMg01no507_e21.g1 PHD_FILE: MSMg01no507_e21.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:35:48 2005
         (557 letters)



>mm_chr18_71613022_71613978
          Length = 957

 Score = 1046 bits (541), Expect = 0.0
 Identities = 550/553 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gcattaagctgtggaggggaaaaccaaagcaatagagagctgggatgttgtttatggcag 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gcattaagctgtggaggggaaaaccaaagcaatagagagctgggatgttgtttatggcag 264

                                                                       
Query: 65  agacattaatggtgtggaaagctgaggtaaggaataaatagaacaagcaaagaaggagta 124
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 265 agacattaatggtgtggaaagctgaggtaaagaataaatagaacaagcaaagaaggagta 324

                                                                       
Query: 125 ccttatgcttgcagcttgtagaggagttagatgtgtggggctacccaagcatgatggaga 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ccttatgcttgcagcttgtagaggagttagatgtgtggggctacccaagcatgatggaga 384

                                                                       
Query: 185 ctaacgatgtctctaggagttctagatgctggccatggagctgaagaatttggtggttgt 244
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ctaatgatgtctctaggagttctagatgctggccatggagctgaagaatttggtggttgt 444

                                                                       
Query: 245 ctttctctgcttgatcttgcttgaagttgatcttttattattatataccacaaattcctt 304
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 445 ctttctctgcttgatcttgcttgcagttgatcttttattattatataccacaaattcctt 504

                                                                       
Query: 305 cttataacagaagtacttattctttctttattttttatttttattttttactccagattt 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 cttataacagaagtacttattctttctttattttttatttttattttttactccagattt 564

                                                                       
Query: 365 tattcccctccgggtctaccctctgactgtttcatatcccatacctcctcccctcccctt 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 tattcccctccgggtctaccctctgactgtttcatatcccatacctcctcccctcccctt 624

                                                                       
Query: 425 gtctcctttataatcatgtagaagtacatttttattcactaaaagatgaaggcaacttat 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 gtctcctttataatcatgtagaagtacatttttattcactaaaagatgaaggcaacttat 684

                                                                       
Query: 485 tgaaggtttactcatgtttccttaaaacacaatagataatttcattttcccataatatgt 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 tgaaggtttactcatgtttccttaaaacacaatagataatttcattttcccataatatgt 744

                        
Query: 545 gtttaaaaattcc 557
           |||||||||||||
Sbjct: 745 gtttaaaaattcc 757


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 557
Length of database: 957
Length adjustment: 10
Effective length of query: 547
Effective length of database: 947
Effective search space:   518009
Effective search space used:   518009
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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