Query= MSMg01no507_e23.b1 MSMg01no507_e23.b1 CHROMAT_FILE:
MSMg01no507_e23.b1 PHD_FILE: MSMg01no507_e23.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:35:48 2005
(570 letters)
>mm_chr18_58088050_58089019
Length = 970
Score = 1033 bits (534), Expect = 0.0
Identities = 558/566 (98%)
Strand = Plus / Minus
Query: 5 gaattcagttctacttctccattgttaagattaaatatatacacaaaagtctatgaacca 64
|||||||||||||| | |||||||||||||||||||||||||||||||||||||||||
Sbjct: 632 gaattcagttctacaacagcattgttaagattaaatatatacacaaaagtctatgaacca 573
Query: 65 gagaggcaaagtaagccaagaacaaaaggaactcgctggataagctgtaatccggaagtt 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 572 gagaggcaaagtaagccaagaacaaaaggaactcgctggataagctgtaatccggaagtt 513
Query: 125 aaagcgatgtgaacaagctaagctgcaggataaacaccgccgaggaaataagaaccgtaa 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 512 aaagcgatgtgaacaagctaagctgcaggataaacaccgccgaggaaataagaaccgtaa 453
Query: 185 gctcagaacgacatgtcaagtggaaaagacaaacacgtatgtgtaactgcaaacaatgac 244
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 452 gctcagaacgacacgtcaagtggaaaagacaaacacgtatgtgtaactgcaaacaatgac 393
Query: 245 aataactcaagggaaatgggaacaaactcaaatctttgcagcatctcagtgtaggacata 304
||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 392 aataactcaagggaagtgggaacaaactcaaatctttgcagcgtctcagtgtaggacata 333
Query: 305 gtaaacaccttataaagcaacattctgaaatctaacgctgctcagttacagctacaacat 364
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 332 gtaaacaccttataaagcaacattctgaaatctaacgctgctcagttacagctacaacac 273
Query: 365 aggaagaagtatatgtggttagttacagagaaagcagggtctatacagaccactgttgta 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 272 aggaagaagtatatgtggttagttacagagaaagcagggtctatacagaccactgttgta 213
Query: 425 tagttcacatctaatatatgtctatgaaaattactcagctgttacgaaaaataaaattat 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 212 tagttcacatctaatatatgtctatgaaaattactcagctgttacgaaaaataaaattat 153
Query: 485 gaaattcacaagtaaattggtggagctggaaacccaaataaggtaaccaaatccaggaaa 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 152 gaaattcacaagtaaattggtggagctggaaacccaaataaggtaaccaaatccaggaaa 93
Query: 545 ataaacatggtgcgtgctctctcact 570
||||||||||||||||||||||||||
Sbjct: 92 ataaacatggtgcgtgctctctcact 67
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 570
Length of database: 970
Length adjustment: 10
Effective length of query: 560
Effective length of database: 960
Effective search space: 537600
Effective search space used: 537600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no507_e23.g1 MSMg01no507_e23.g1 CHROMAT_FILE:
MSMg01no507_e23.g1 PHD_FILE: MSMg01no507_e23.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:35:49 2005
(483 letters)
>mm_chr18_57932500_57933382
Length = 883
Score = 911 bits (471), Expect = 0.0
Identities = 480/483 (99%), Gaps = 1/483 (0%)
Strand = Plus / Plus
Query: 1 taaaaggcagcatccaagggaggagtgtttcaggaaaaccagacacctgggaattgtagc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 taaaaggcagcatccaagggaggagtgtttcaggaaaaccagacacctgggaattgtagc 260
Query: 61 atctgggggtgctcagttccctgctgcatcctattgcacgagcgagtcattgaagccaga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atctgggggtgctcagttccctgctgcatcctattgcacgagcgagtcattgaagccaga 320
Query: 121 ttcaatggaagggatctcttggaggagtaacaagaagattgatgtagctcagtagtaaat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttcaatggaagggatctcttggaggagtaacaagaagattgatgtagctcagtagtaaat 380
Query: 181 gattgcccagcaagtatgcagtcctgagttcaattcccctgaaacacacatatacaccca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gattgcccagcaagtatgcagtcctgagttcaattcccctgaaacacacatatacaccca 440
Query: 241 aaagaacaaatgaaataagagacgttattgtagcccatttgggggggggggagccatgtt 300
|||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||
Sbjct: 441 aaagaacaaatgaaataagagacgttattgtagcccatttggggggggtg-agccatgtt 499
Query: 301 tcatacaatatttcccacacaaataatattgttttagtctgctttctgttcctgtggtaa 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 tcatacaatatttcccacacaaataatattgttttagtctgctttctgttcctgtggtaa 559
Query: 361 aacactgaccaaaagtaacttgtgaatgaaaggtttgtttcatcttacaggttacagtct 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 aacactgaccaaaagtaacttgtgaatgaaaggtttgtttcatcttacaggttacagtct 619
Query: 421 accactgagggaagccaaggcagggactaaaggcaggcaggaacttgaaggaagaaatag 480
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 acgactgagggaagccaaggcagggactaaaggcaggcaggaacttgaaggaagaaatag 679
Query: 481 aca 483
|||
Sbjct: 680 aca 682
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 483
Length of database: 883
Length adjustment: 10
Effective length of query: 473
Effective length of database: 873
Effective search space: 412929
Effective search space used: 412929
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
