Query= MSMg01no507_f13.b1 MSMg01no507_f13.b1 CHROMAT_FILE:
MSMg01no507_f13.b1 PHD_FILE: MSMg01no507_f13.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:35:51 2005
(684 letters)
>mm_chr18_30065464_30066547
Length = 1084
Score = 1205 bits (623), Expect = 0.0
Identities = 660/677 (97%), Gaps = 11/677 (1%)
Strand = Plus / Plus
Query: 11 tcacaaagactgtaccagta---tgcacaggtctatatgggtctacacaagaacatatta 67
|||||||||||| | |||| |||||||||||||||||||||||||||||||||||||
Sbjct: 216 tcacaaagactg-a--agtagtgtgcacaggtctatatgggtctacacaagaacatatta 272
Query: 68 tattatattatattatattatattatattatattatattatattatatcatacctattag 127
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 273 tattatattatattatattatattatattatattatattatat-----catacctattag 327
Query: 128 cttagtatttttatgggctcctgactttgagaactagtaggtgtctgactattttgcctt 187
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328 cttagtatttttatgggctcctgactttgagaactagtaggtgtctgactattttgcctg 387
Query: 188 ttcttgggagtctttgcctcctgttggattgccatgttaaaatttgatataatagttttt 247
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 388 ttcttgggagtctttgcctcctgttggattgccgtgttaaaatttgatataatagttttt 447
Query: 248 gtttcattttattatattttatattacttggttgttatctcttaaatgcctgttcttttc 307
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 448 gtttcattttattatattttatattacttggttgttatctcttaaaggcctgttcttttc 507
Query: 308 taatgagagaaagactgggagtggatctggcagggagatgtgtggaagaacctacatgga 367
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 508 taatgagagaaagactgggagtggatctggcagggagatgtgtggaagaacctacatgga 567
Query: 368 aggaggaaaaaccataaccagaatatattgtacttgaaaagaatctattttcaataaaag 427
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 568 aggaggaaaaaccataaccagaatatattgtacttgaaaagaatctattttcaataaaag 627
Query: 428 gagaaaaatgggatgttgctgaattttctaaaatagtactgcagaactgcagaaaccttc 487
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 628 gagaaaaatgggatgttgctgaattttctaaaatagtactgcagaactgcagaaaccttc 687
Query: 488 ataacccagattctctgcatctgtgagctaatgcagagcatggggcagcccttacagagc 547
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 688 ataacccagattctctgcctctgtgagctaatgcagagcatggggcagcccttacagagc 747
Query: 548 tgttctcataagtgtcgaaagggatagaaacccatactgtttctaacaaattgagtttga 607
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 748 tgttctcataagtgtcgaaagggatagaaacccatactgtttctaacaaattgagtttga 807
Query: 608 gcctttacagaggttagtaagggaagtgccacaatccatacttattaatatatgtccaga 667
||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 808 gccttcacagaggttagtaagggaagtaccacaatccatacttattaatatatgtccaga 867
Query: 668 ccatgcatctcttgtgc 684
|||||||||||||||||
Sbjct: 868 ccatgcatctcttgtgc 884
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 50
Number of extensions: 10
Number of successful extensions: 10
Number of sequences better than 10.0: 1
Number of HSP's gapped: 7
Number of HSP's successfully gapped: 1
Length of query: 684
Length of database: 1084
Length adjustment: 10
Effective length of query: 674
Effective length of database: 1074
Effective search space: 723876
Effective search space used: 723876
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no507_f13.g1 MSMg01no507_f13.g1 CHROMAT_FILE:
MSMg01no507_f13.g1 PHD_FILE: MSMg01no507_f13.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:35:51 2005
(586 letters)
>mm_chr18_30265311_30266296
Length = 986
Score = 1042 bits (539), Expect = 0.0
Identities = 575/587 (97%), Gaps = 2/587 (0%)
Strand = Plus / Minus
Query: 1 tttaaaccatggacatagtccatcactgaaatctccaaccacattattttacacattccc 60
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 786 tttaaaccatggatatagtccatcactgaaatctccaaccacattattttacacattccc 727
Query: 61 tttttctcctgaggtcttcgagaataactttactctgatca-ccccctcccccagcctgc 119
||||||||||||||||||||||||| ||| |||||||||| |||||| |||||||||||
Sbjct: 726 cttttctcctgaggtcttcgagaatagcttaactctgatcacccccct-ccccagcctgc 668
Query: 120 tacacagacacatggcagaggactttttgcaagaaattcattcaaggccaaagacttgag 179
|| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 667 tatacagacacatggcagaggactttttgcaagaaattcattcaaggccaacgacttgag 608
Query: 180 atgccattttggaattagaaagatacaggaacaattttaaattatcttgacaaagttaat 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 607 atgccattttggaattagaaagatacaggaacaattttaaattatcttgacaaagttaat 548
Query: 240 taaattacacttggaggaccgatgagaaccgatgaaaccttgggggaagctatttctaat 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 547 taaattacacttggaggaccgatgagaaccgatgaaaccttgggggaagctatttctaat 488
Query: 300 tagttactgaatcataactaatgctgggacaacaggaaaatgggctgaacacctgaaaat 359
||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 487 tagttaccgaatcataactaatgctggggcaacaggaaaatgggctgaacacctgaaaat 428
Query: 360 ctattttgtactgcagtggtggttctctggagtactgaagattgtgggttcttgaatggg 419
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 427 ctattttgtactgcagtggtggttctctggagtactgaagtttgtgggttcttgaatggg 368
Query: 420 caactgaggtgaaatcacagttccatccctccttaggcagaagggctcatgtttccatgt 479
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 367 caactgaggtgaaatcacagttccatccctccttaggcagaaggtctcatgtttccatgt 308
Query: 480 ctgtatacccatgttcttatctgtgcatctcttcctatgacaatagcactggcatcatgc 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 307 ctgtatacccatgttcttatctgtgcatctcttcctatgacaatagcactggcatcatgc 248
Query: 540 aggagtgaacatatgaaacttgtagttcaatgcctggtaaatcacat 586
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 247 aggagtgaacatatgaaacttgtagttcaatgcctggtaaatcacat 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 586
Length of database: 986
Length adjustment: 10
Effective length of query: 576
Effective length of database: 976
Effective search space: 562176
Effective search space used: 562176
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
