Query= MSMg01no507_h15.b1 MSMg01no507_h15.b1 CHROMAT_FILE:
MSMg01no507_h15.b1 PHD_FILE: MSMg01no507_h15.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:36:02 2005
(636 letters)
>mm_chr18_49127538_49128573
Length = 1036
Score = 816 bits (422), Expect = 0.0
Identities = 468/498 (93%), Gaps = 23/498 (4%)
Strand = Plus / Minus
Query: 27 gaaaaagtagtttaaatttagcaactgaagaacacctgcaaaatagattcttgatattat 86
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 475 gaaaaagtagtttaaatttagcaactgaagaacacctgcaaaatagattgttgatattat 416
Query: 87 atttaaattcttatatctaaaagggagccaaaacacttacattcatgcttttgcaataga 146
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 415 atttaaattgttatatctaaaagggagccaaaacacttacattcatgcttttgcaataga 356
Query: 147 caaatagataagagggaggatgaatgttaactacatttagctaaaataagagcacactgg 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 355 caaatagataagagggaggatgaatgttaactacatttagctaaaataagagcacactgg 296
Query: 207 ataaaacttctatttttgttatttgtccttggctggttggtactacaaagggttacatct 266
|||||||||||||||||||||||||||||||||| |||||||||||||||| || |||||
Sbjct: 295 ataaaacttctatttttgttatttgtccttggctagttggtactacaaaggttttcatct 236
Query: 267 attttgtctttattattattattattattattattattattattattattattatttact 326
||||||||||||||||| |||||||||||||||||||
Sbjct: 235 attttgtctttattattc-----------------------attattattattatttact 199
Query: 327 aatattacttgatgtagtaataggttatcattccttaatcacacatgctggtcacaaatt 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 198 aatattacttgatgtagtaataggttatcattccttaatcacacatgctggtcacaaatt 139
Query: 387 tgccaccctactgccttagcttctgaaggactgggattacaagaacacaccacaatatca 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 138 tgccaccctactgccttagcttctgaaggactgggattacaagaacacaccacaatatca 79
Query: 447 aactactgaaaaagttttagattggcaaaatgacattgccatggaccaccccagttgggt 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 78 aactactgaaaaagttttagattggcaaaatgacattgccatggaccaccccagttgggt 19
Query: 507 ttggtggtccctggaatg 524
|||||||||||||||||
Sbjct: 18 atggtggtccctggaatg 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 636
Length of database: 1036
Length adjustment: 10
Effective length of query: 626
Effective length of database: 1026
Effective search space: 642276
Effective search space used: 642276
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no507_h15.g1 MSMg01no507_h15.g1 CHROMAT_FILE:
MSMg01no507_h15.g1 PHD_FILE: MSMg01no507_h15.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:36:02 2005
(611 letters)
>mm_chr18_49027670_49028683
Length = 1014
Score = 1133 bits (586), Expect = 0.0
Identities = 606/614 (98%), Gaps = 3/614 (0%)
Strand = Plus / Plus
Query: 1 atctgacatctgatagagaacatagtggagacaagcaagatgagataaaaagactaagaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atctgacatctgatagagaacatagtggagacaagcaagatgagataaaaagactaagaa 260
Query: 61 ttgtttcagtgatcctacaaatgcatgaagtaagaggatatatgagatatattatgagat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttgtttcagtgatcctacaaatgcatgaagtaagaggatatatgagatatattatgagat 320
Query: 121 gtaaataacaatatgcactaatggcaccagtgtgaaaatttgagacctaggaatcatttt 180
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gtaaacaacaatatgcactaatggcaccagtgtgaaaatttgagacctaggaatcatttt 380
Query: 181 gggacaatggattaggatggaatgacactgcaactagtctcacacttcctgatgtatttg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gggacaatggattaggatggaatgacactgcaactagtctcacacttcctgatgtatttg 440
Query: 241 cttcagcataccctaacattggaatgtagcctcaaaggaggtctcctcccttccaaattg 300
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 441 cttcagcataccctaacattggaatgtagcctcaaaggaggtctccttccttccaaattg 500
Query: 301 actatcaggagcctggattacataacctgaacattagttcctggttgggacaaaagaagg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 actatcaggagcctggattacataacctgaacattagttcctggttgggacaaaagaagg 560
Query: 361 aatttaaatttatggttacaagaagctcaattacttctttttttttttt---catttgtt 417
|||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||
Sbjct: 561 aatttaaatttatggttacaagaaactcaattacttctttttttttttttttcatttgtt 620
Query: 418 tttctgcagactatttaaagccattgtttcagattctagcatgtctagagaaggaattca 477
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tttctgcagactatttaaagccattgtttcagattctagcatgtctagagaaggaattca 680
Query: 478 tgctcaagaaagaaagcccagggaagagttcttgttcctttactgtctgttgtaaaagct 537
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tgctcaagaaagacagcccagggaagagttcttgttcctttactgtctgttgtaaaagct 740
Query: 538 ggaaccaacaagggtcataccattgagttacatatttccttgattcatatgtcattggtg 597
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 741 ggaaccaacaagggtcataccatggagttacatatttccttgattcatatgtcattggtg 800
Query: 598 ctattcctcatgag 611
||||||||||||||
Sbjct: 801 ctattcctcatgag 814
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 611
Length of database: 1014
Length adjustment: 10
Effective length of query: 601
Effective length of database: 1004
Effective search space: 603404
Effective search space used: 603404
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
