Query= MSMg01no507_n20.b1 MSMg01no507_n20.b1 CHROMAT_FILE:
MSMg01no507_n20.b1 PHD_FILE: MSMg01no507_n20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:36:33 2005
(669 letters)
>mm_chr18_26371995_26373060
Length = 1066
Score = 1195 bits (618), Expect = 0.0
Identities = 653/666 (98%), Gaps = 5/666 (0%)
Strand = Plus / Minus
Query: 5 tcagttgcaaagctgattcagagtctcctccgctgctttcatttgttatttaataatctt 64
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 866 tcagttgcaaagctgattcagagtctcctccactgctttcatttgttatttaataatctt 807
Query: 65 gcaacttttaaagctgatcaggctagaagaaggcagattcctgctttaggtgacctgaga 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 806 gcaacttttaaagctgatcaggctagaagaaggcagattcctgctttaggtgacctgaga 747
Query: 125 tccaaagaaactgtaccatcaaggtactaggagaaattacctcccccgaaagtaggaatg 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 746 tccaaagaaactgtaccatcaaggtactaggagaaattacctcccccgaaagtaggaatg 687
Query: 185 ggagtgtataagccaaaaaggaagaagcaactcctaaaagtattattggaaaggcacctt 244
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 686 ggagtgtataagccaaaaaggaagaagcaactcctaaaagtattattggagaggcacctt 627
Query: 245 attcacattaaatactaaaatattaaaattgatagaggtgaataaatgaattacttagtc 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 626 attcacattaaatactaaaatattaaaattgatagaggtgaataaatgaattacttagtc 567
Query: 305 tcccatgcattaaaattaatttttcatcaccctcttcaggtcacttcccattggcttttt 364
||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||
Sbjct: 566 tcccatgcattaaaattaatttttcatcaccttcttcaggtcacttcccattgggttttt 507
Query: 365 aaagccctcttaatattttatttgataaaggaaacagggttccttttgacatatttggca 424
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 506 aaagccctcttaatattttatttgataaaggaaacagggttccttttgacatatttggga 447
Query: 425 ttccaggatttcaccaactatcttcacaaacaggtatctcagtcccaatagagacatgac 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 ttccaggatttcaccaactatcttcacaaacaggtatctcagtcccaatagagacatgac 387
Query: 485 aaagaataactctatctctaaccttgaactagacacagttcttctaagcagact-ccccc 543
|||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 386 aaagaatagctctatctctaaccttgaactagacacagttcttctaagcagacttccccc 327
Query: 544 acacacacccaatacttctgctcatggatccattctcttctgggtgcagtgccacgtttc 603
| | |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 cc-c---cccaatacttctgctcatggatccattctcttctgggtgcagtgccacgtttc 271
Query: 604 cattttcctctgccacccgcaaccattgtcctcttgaaattttatattgaaaaacccgaa 663
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 270 cattttcctctgccaccggcaaccattgtcctcttgaaattttatattgaaaaacccgaa 211
Query: 664 agaaat 669
||||||
Sbjct: 210 agaaat 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 669
Length of database: 1066
Length adjustment: 10
Effective length of query: 659
Effective length of database: 1056
Effective search space: 695904
Effective search space used: 695904
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no507_n20.g1 MSMg01no507_n20.g1 CHROMAT_FILE:
MSMg01no507_n20.g1 PHD_FILE: MSMg01no507_n20.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:36:33 2005
(568 letters)
>mm_chr18_26184365_26185332
Length = 968
Score = 1075 bits (556), Expect = 0.0
Identities = 565/568 (99%)
Strand = Plus / Plus
Query: 1 cagggaatggcatgccgagtactgaggaacacaaattcattgcatcaagaaatccacact 60
||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||
Sbjct: 201 cagggaatggcatgccgagtattgaggaacacaaattcattgcatcaggaaatccacact 260
Query: 61 tagaagctatggataccaagaaaagcttttaaagtttagaaaaaaaatcaatgaaaaata 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tagaagctatggataccaagaaaagcttttaaagtttagaaaaaaaatcaatgaaaaata 320
Query: 121 caaaaattgaatctctacagaacttgtgtttctttttctttccccaaagaaaatttcact 180
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 321 caaaaattgaatctctacagaacttgtgtttctttttctttccccaaagaaattttcact 380
Query: 181 tctaggaacttagggatttgttaagtcggttactaactagcttcttcccatacctatgca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tctaggaacttagggatttgttaagtcggttactaactagcttcttcccatacctatgca 440
Query: 241 atgccatatgtaagaaaattcaagcaggaaaaattggtttggcttaaaaattaaattcct 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 atgccatatgtaagaaaattcaagcaggaaaaattggtttggcttaaaaattaaattcct 500
Query: 301 ctttattataaggaaaacaggaggtcccactataaattccctctaaatcaatccataaaa 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ctttattataaggaaaacaggaggtcccactataaattccctctaaatcaatccataaaa 560
Query: 361 ggaacataacattactaaccttgggacgccttcatttatgactgtttcttttattctcat 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ggaacataacattactaaccttgggacgccttcatttatgactgtttcttttattctcat 620
Query: 421 ctatgtttccatcaccatgtctaaatgaagatatcagtttctttataacatagttctact 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ctatgtttccatcaccatgtctaaatgaagatatcagtttctttataacatagttctact 680
Query: 481 acatatttaataataatatgttgatgtccacttaatagtttacaataaaatctatcttct 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 acatatttaataataatatgttgatgtccacttaatagtttacaataaaatctatcttct 740
Query: 541 gagaatgacaaaaacaaacttggagtca 568
||||||||||||||||||||||||||||
Sbjct: 741 gagaatgacaaaaacaaacttggagtca 768
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 568
Length of database: 968
Length adjustment: 10
Effective length of query: 558
Effective length of database: 958
Effective search space: 534564
Effective search space used: 534564
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
