BAC Information

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BAC

Clone NameMSMg01-507O17
Chromosome18 (Build37)
Map Location 17,706,432 - 17,706,961
singlet/doubletsinglet
Overlap genenone
Upstream geneCdh2, LOC665519, 1700001G01Rik, 4921533I20Rik
Downstream geneLOC100040647
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-507O17.T7 (MSMg01no507_o17.b1)MSMg01-507O17.TJ (MSMg01no507_o17.g1)
ACCAG581953AG581954
length7511,645
length of high quality
(start - end)		700 (52 - 751)---
definitionCHROMAT_FILE: MSMg01no507_o17.b1 PHD_FILE: MSMg01no507_o17.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:36:38 2005CHROMAT_FILE: MSMg01no507_o17.g1 PHD_FILE: MSMg01no507_o17.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:36:38 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NAATCTATAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGCG
CGGAATTCCAGGTGCTTTCTCAGCAGTTTCTTGGCTGGAGAGATGAAGTT
GAGTTTATAATTTTGCAAAGGACTGTATTGTATTCCTCGGGTAGAAGACG
TGTTAGATAGGTTCCCCAAATCAGGCAGAGAAATAGAAGCCTTGCTAAGA
AAAGGGAGTCCTCCATTTTGCCTCAAGCTCAGGAAAGTGGTCCAGATGTG
ATAAAATACAATCTAAGTAGCAGAGTCCAACATCTTTGTGTAATTTCTAC
TACTTTAGATAATCCCTCACTCATATTCCTGAATGTAATGCCAATAAAAC
TCATTGGCTATTCAAGTTGTACATTGGTAGTGTCTATCCATTGGTCTATC
ATGAGCTCTCAATCTGGGAAAGGCCTGTCTCTCCTAAGTTATTAAACAGG
CCTTTGGCAATGCACTTGATTTTGTGGCCATAGTAGGCCATGTGATATTT
CCTCTTCAAACAAATGAGGTTTAACCAGGTACTCAGTTATCTTTTACTCC
ACAAATGTAGTCTTCTGAATTTTACCCCCTAAACCTGTCATCACAAGAGT
ATTTAACATGAGTGCAAATGTAAAATAAAAATATTAATTGTTGGTTGCAT
AGGTATTATAAACTAATGACATGATGGTAGCTAAAATCCAGAAGAAAACT
TAGCCTGAGTAATAAAATTTCTACTTCTTCTTCAAGTGCTGTTTTCTTGA
A

TTGTTTGATCAGTGTGATGTGTAGCCGGCGCGGTTCTGCCGCCTTGGCTC
TCATGAGCTGTCATTTCCCCCACACTAGTGNGCAGCGCAGCTTCGGCGCC
GCCGCGGGACGTCTCCTCGTCTGAAGGTACCATCACGACAGCCGCTACTA
CACGCTCCTACTACTCTGTGCATCACTCTATCCCACACCCCTCTAGCATG
ATCTCTCTAATATTATTATATAANCNATCAACATATAACTAAGTATATAT
CCTCATCCANCAGACGCTACAACCACACAGCGTATACGACTATTTACATG
TAGAGCGATCATGACAGCAATACATACGATCTAGCCTGTCGCACAGCAAC
AGACCCTCGAGATACCACCATACCCGTCAGACCGCTTCGACTCATGGACN
TGCATGGACTAGTCGCACTGTGTTNGCGTGTCGCCGACACATTAGCGACT
GGCACGCGACTCGATGACGACACTACACCGAGCGCCGGCCGCGCGATCAG
CGATGTATAAGGTGCGTATCAGCATAAGAGACTTGTATATATGATACGCA
GACTANACTAGGTCAATACTACAAGATATCNATCTCGCATGTCGCGGCCG
TCGTCGCGCNGACTGTCTGATATGAGATATGCGATGAGTATGAGTAGAGA
TAACGACACATGGCATGAGAGTATGAGCNATAGCGCGAGAGATAGATATG
TATANAGCGTCAGTTTNCATGACGATGCTAGATACTGTCATGTTCGAGCG
ATACTAGTATAANACTGTCTAATGTCTATCTTACATGACGCGTCTTGCTC
TCATCTCGTGCTAGCTACTCTCTANCGCGCATGTCATGCANCAGTCGCAC
TGATCTCACACTCGAATATGTAATCTGATGAATCGAGTAGATGCATGAGT
GTGCACGCGGTGCTCGCGCGTCGTAGTCGACTTGTTTCTGGTCGTGAGTT
TAGTTCGTACTCGTGCATGCAGCTAGTGTCATGTGCATGGTGTTCTCATT
TATCGCAGCATCAAGCGACGTNATGCATAGTGCTACATGTGAGAGTATAG
AGCGTATGAGATGCGAGCGATATGACCGTGACCCGACTACGATTACTATC
TATATCATATGTACGCACACGCCTAACCACGCGTTCTTGATTATCACAGT
CTACACACATATGCTCTCGGATGTCATATGTCGTGTATCCGCCGTCTTAT
ACTCGTTCTCATGTCGTCGACGGTGGTCATGCTCTGCTGCGTTCGAAGCG
TGTCACCGGTATCACCGTACCACAGTACCACCGACCTATATGAACGACAT
ATGATCTCTAACACGACGTAGTGTACTCAGATAATAGCATTCTCACGCCA
TATATGATACAATACACGCCTATCTACTGCTTCTTTCATACTATATCGCG
CCTGTTCATCCTACGGCGTCCCCGCGCCCTATGTATCNCTATACTCGTAT
TCTGTACGCACNGCGCGTTCCGACTTACGCTCATGTGTTCCATACGTATA
TATCACCGACAGCCACGTAATTNTGGTGCACACTTCTCAGAGTNGCTGTC
TGTTATCGCGTGCGCACATGTANTCACGCATCTGGACGCAGTCNCATGAC
ACCTCACGAGTCGCCTTATATTACGCGTATACGCGACGTGNTGTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no507_o17.b1 MSMg01no507_o17.b1 CHROMAT_FILE:
MSMg01no507_o17.b1 PHD_FILE: MSMg01no507_o17.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:36:38 2005
         (700 letters)



>mm_chr18_17705862_17706961
          Length = 1100

 Score =  986 bits (510), Expect = 0.0
 Identities = 525/530 (99%)
 Strand = Plus / Minus

                                                                        
Query: 171  ctcaagctcaggaaagtggtccagatgtgataaaatacaatctaagtagcagagtccaac 230
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1100 ctcaagctcaggaaagtggtccagatgtgataaaatacaatctaagtagcagagtccaac 1041

                                                                        
Query: 231  atctttgtgtaatttctactactttagataatccctcactcatattcctgaatgtaatgc 290
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1040 atctttgtgtaatttctactactttagataatccctcactcatattcctgaatgtaatgc 981

                                                                        
Query: 291  caataaaactcattggctattcaagttgtacattggtagtgtctatccattggtctatca 350
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 980  caataaaactcattggctattcaagttgtacattggtagtgtctatccattggtctatca 921

                                                                        
Query: 351  tgagctctcaatctgggaaaggcctgtctctcctaagttattaaacaggcctttggcaat 410
            ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 920  tgagctctcaatctgggaacggcctgtctctcctaagttattaaacaggcctttggcaat 861

                                                                        
Query: 411  gcacttgattttgtggccatagtaggccatgtgatatttcctcttcaaacaaatgaggtt 470
            |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 860  gcacttgattttgtggccatggtaggccatgtgatatttcctcttcaaacaaatgaggtt 801

                                                                        
Query: 471  taaccaggtactcagttatcttttactccacaaatgtagtcttctgaattttacccccta 530
            ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 800  taaccaggtactcagttatcttttactacacaaatgtagtcttctgaattttacccccta 741

                                                                        
Query: 531  aacctgtcatcacaagagtatttaacatgagtgcaaatgtaaaataaaaatattaattgt 590
            |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 740  aacctgtcatcacaagagtatttaacatgagtgcgaatgtaaaataaaaatattaattgt 681

                                                                        
Query: 591  tggttgcataggtattataaactaatgacatgatggtagctaaaatccagaagaaaactt 650
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680  tggttgcataggtattataaactaatgacatgatggtagctaaaatccagaagaaaactt 621

                                                              
Query: 651  agcctgagtaataaaatttctacttcttcttcaagtgctgttttcttgaa 700
            ||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620  agcttgagtaataaaatttctacttcttcttcaagtgctgttttcttgaa 571


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 700
Length of database: 1100
Length adjustment: 10
Effective length of query: 690
Effective length of database: 1090
Effective search space:   752100
Effective search space used:   752100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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