BAC Information

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BAC

Clone NameMSMg01-508A10
Chromosome18 (Build37)
Map Location 32,633,239 - 32,633,786
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC383420, Slc25a46, Sap130, LOC640549, Ammecr1l, Polr2d, EG626327, Wdr33, Sft2d3, Lims2, Gpr17, Myo7b, Iws1, Proc, LOC546710, Map3k2, Ercc3, Bin1
Downstream geneGypc, LOC100041160, LOC100041170, Tslp, Wdr36, Camk4, Stard4, EG433170, D0H4S114, ENSMUSG00000073610
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-508A10.T7 (MSMg01no508_a10.b1)MSMg01-508A10.TJ (MSMg01no508_a10.g1)
ACCAG582035AG582036
length7571,508
length of high quality
(start - end)
554 (78 - 631)---
definitionCHROMAT_FILE: MSMg01no508_a10.b1 PHD_FILE: MSMg01no508_a10.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:36:47 2005CHROMAT_FILE: MSMg01no508_a10.g1 PHD_FILE: MSMg01no508_a10.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:36:47 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TTTTTTACTCTAGAXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCGAGGA
TCCGCGGAATTCTTTGAACAATTCAAGAATCTGGAAGCACCCCATACAGA
TAGGACCATCAGTAAACACTCTCTTCTCAGATATGAGGTCACATCGTGTG
ATGGATTTACCTGGGATTAAGAATTATGCTATCTATATACAAAGATGAGG
GATTCTGTGGACAGGACTAAGATCTAAAATCACTCTCACTTCTTAACCAA
AGCTGAGCTTACCTGAGGCAGGCCTTTTTAAAAAGATGTAAGCCCTCCTG
AGGGGATGAATTCAAGAAATCTAAAAGGCTGTGGAGGTAGCCATGGGCAA
GGAACTGAAAAGCTCTCTAGTTGCTGAGAGCAGCCCGTGCTCCAGCCTCA
GCCCTCTTTACCTACTGCCACAGTTGGGAAAGGCATTGTAGGGTATCCAC
CAGAGACGACTGCTCAGACATGGGTGTAAGCCAATAGAAAATTTATATTA
GCTGTCCAGCAACTACAATGGGTGTTTGAGATCCCAATGTAACCTCAAGA
CGTTCTCAGGGTGAACTCTTAAGCACAAAAATTACCTTTAGGGTTGGCAT
ATTTCAGTTAACAAGAACAGTTAGTCAGAAGTAAAACTGCNAAAGCCAAA
AGACAAGGTTAATACATTTGGAGACTTCCCCCTAACTATGGACTTANGTT
ATTTGGGCTTTTGTTCTAGTTTTGGCAGGGGGGGCTGTCTATATGCTTGA
ATTTTAA
ACTTCGTCCCGATTGCTGTGTGCGTCCGGCGCGANACGTGTGTGCAGACA
GAGTAATATTTCATCTCCCTCTATAGATAGCGCGGGNGTGTGTNGGNCGC
CCCGCCGCGAAGATGCCTCCTCGCAGACAGATAGAGNGTGAGAGAGCAGC
CGCAGAGAGCATTGTTATACATCCATTTANCTATTAATATTTATCTGCAC
TCACTCTTAAACATATACACCACCCTAACATCGCCGCTNCCGACATCTGC
TGCTCGTGTAGTGTAGCAGAGATAATGATATGTGATAGTNTATCATGANG
NGCAGTTTGAGCGAGGTATGTTGTTGGGTATATAACGTACGTCGTGATGC
GAGACGTGTTCTTCGCCCGCGTGGAGGGACGCGTAGTGTGCGCGTCGCGA
ACNAGGTAATATGTTCTATGTCTGACTGACGCGCTGTGAGTATAGTATTG
TATGGCATGTTGGCGTGTAGGTAGTGTTATCATGTCATTTACCCTGTGAT
TTCGACCGATAGAGTGTTGTGTGTGACTATTTATACACCTGCACCGTGCT
CTCTTCTTTTCCGCGCCTCGTGTCGACGTATTATGCTCGAGCAACTGTTG
CGCGTTATACATATANACACCAGCCGCGAGGCGCGTGTANATGTTTGTGT
GTCGCGCACCGTGTCTCAGGCGAGCACGGGATANGTGATAGAACTATATG
ATAGATGATGAAGCGCGCAGTCGATATAGCATACGNTGCTTGGCACGTAT
ATATATATACATCGTGCGCAGCGTATATACANGCGTTACATCGCACTGAT
CCTCGTATCGNCGTCGATGTGCTACAGTTTGACGCATGATGATCATGCTG
TAACACATTATCTATATGCTGAACGAATAGTAAATGGTAGTGTCGCCNCA
GTGATGTATAATATGGACGCGCTTACTTTTGTATACAGCANTATTAATAT
AATCACTGTGAGAGCAAGNATGAGTGGCGAAGTACTGTATGTACACCTAG
ACACAGTCATATAGAGGACGCGCGAANCATAGTGAAGAGCAGAGGTATAT
ANACGACGTCGCGCAGCACTCACGATCCGTCACCATCACGCGTTGTATTA
TTGTGCTAGTTTACGTATGTGCCTGGATACGCGCGCANGACACTGCACGA
CATAGTAAAACTAACTCACTCGATGAATAACTCATAGACCGCGCGGCGAG
ATATACGTCGTTATAGACGTAGGTATGTGATGCATNCGTAGTACACTATG
ATGATGAGANATTATGCACTGATGCAGACGAGACGACTGTGATCAACAAG
TATACGAACGTGCATGGAGGTAGCTATATATATGTATACTATATACTACA
CNGATGCACGCGAAGAAACGANGNGTGTCATAGTCATGCTATATGTAAAG
CTTAGCGCGATGACATCGATAACAANCACGAGCTATGCAGACTGACGAGA
GCGATGAGTANTAATACTGCTACGTCTACTGCACTACTGTATCAGTCTAT
ACCCTCTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no508_a10.b1 MSMg01no508_a10.b1 CHROMAT_FILE:
MSMg01no508_a10.b1 PHD_FILE: MSMg01no508_a10.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:36:47 2005
         (554 letters)



>mm_chr18_32633235_32634182
          Length = 948

 Score =  951 bits (492), Expect = 0.0
 Identities = 536/554 (96%), Gaps = 6/554 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   aatctggaagcaccccatacagataggaccatcagtaaacactctcttctcagatatgag 60
           |||| |||||||||||||||||||||||||||||||| ||||||||||||| | ||||||
Sbjct: 552 aatcaggaagcaccccatacagataggaccatcagtagacactctcttctcgggtatgag 493

                                                                       
Query: 61  gtcacatcgtgtgatggatttacctgggattaagaattatgctatctatatacaaagatg 120
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 492 gtcacatcgtgtgatggatttacctgggattaagagttatgctatctatatacaaagatg 433

                                                                       
Query: 121 agggattctgtggacaggactaagatctaaaatcactctcacttcttaaccaaagctgag 180
           |||| |||||||||||||||||||||||||||      ||||||||||||||||||||||
Sbjct: 432 aggggttctgtggacaggactaagatctaaaa------tcacttcttaaccaaagctgag 379

                                                                       
Query: 181 cttacctgaggcaggcctttttaaaaagatgtaagccctcctgaggggatgaattcaaga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 cttacctgaggcaggcctttttaaaaagatgtaagccctcctgaggggatgaattcaaga 319

                                                                       
Query: 241 aatctaaaaggctgtggaggtagccatgggcaaggaactgaaaagctctctagttgctga 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 318 aatctaaaaggctgtggaggtagccatgggcaaggaactgaaaagctctctagttgctga 259

                                                                       
Query: 301 gagcagcccgtgctccagcctcagccctctttacctactgccacagttgggaaaggcatt 360
           ||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 258 gagaagcccgtgctccagcctcagccctctttacctattgccacagttgggaaaggcatt 199

                                                                       
Query: 361 gtagggtatccaccagagacgactgctcagacatgggtgtaagccaatagaaaatttata 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 198 gtagggtatccaccagagacgactgctcagacatgggtgtaagccaatagaaagtttata 139

                                                                       
Query: 421 ttagctgtccagcaactacaatgggtgtttgagatcccaatgtaacctcaagacgttctc 480
           ||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 138 ttagctggccagcaactacaatgggtgtttgagatcccaatgtaacctcaagactttctc 79

                                                                       
Query: 481 agggtgaactcttaagcacaaaaattacctttagggttggcatatttcagttaacaagaa 540
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 78  agggtgaacttttaagcacaaaaattacctttagggttggcatatttcagttaacaagaa 19

                         
Query: 541 cagttagtcagaag 554
           ||||||||||||||
Sbjct: 18  cagttagtcagaag 5


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 554
Length of database: 948
Length adjustment: 10
Effective length of query: 544
Effective length of database: 938
Effective search space:   510272
Effective search space used:   510272
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)