Query= MSMg01no509_f03.b1 MSMg01no509_f03.b1 CHROMAT_FILE:
MSMg01no509_f03.b1 PHD_FILE: MSMg01no509_f03.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:38:31 2005
(518 letters)
>mm_chr18_53617841_53618758
Length = 918
Score = 955 bits (494), Expect = 0.0
Identities = 509/514 (99%)
Strand = Plus / Minus
Query: 5 gaattctacctttgccctactgacctcattgcttccctccagacactgtgagctactggg 64
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 718 gaattctacctttgacctactgacctcattgcttccctccagacactgtgagctactggg 659
Query: 65 tatccttccaggatatctgctcaccgagttgcctatgcgtctggtggcttaaactgacag 124
|||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||
Sbjct: 658 tatccttccaggatatctgctcaccgagttgcctctgcgtctggtgacttaaactgacag 599
Query: 125 tgatctacctccagttgtctggctctaactctcttcaaagatgaaatgaaaagaccaatg 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 598 tgatctacctccagttgtctggctctaactctcttcaaagatgaaatgaaaagaccaatg 539
Query: 185 tggctttccatctgaagaagacactgccttgtaacccacttcctagagcccaggtgtctg 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 538 tggctttccatctgaagaagacactgccttgtaacccacttcctagagcccaggtgtctg 479
Query: 245 gtgagtggaatgcattggaatcaagaaagtttactgtttatttgtttcgctctggccttc 304
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 478 gtgagtggaatgcattggaatcaagaaagcctactgtttatttgtttcgctctggccttc 419
Query: 305 ccacttctatgtccatggtgagaagtgaagggggtgggtggttgaggtggggagcattca 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 418 ccacttctatgtccatggtgagaagtgaagggggtgggtggttgaggtggggagcattca 359
Query: 365 ccttcagctcctcagactctgccctttccccagaagatgcagcaggagccttggtattct 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 358 ccttcagctcctcagactctgccctttccccagaagatgcagcaggagccttggtattct 299
Query: 425 gaagacacaccttcctcttcagagacactaacagcttaaatattctctcgggtttgttcc 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 298 gaagacacaccttcctcttcagagacactaacagcttaaatattctctcgggtttgttcc 239
Query: 485 tatcgcagtcttgcctatgaaggcaaagcttttc 518
||||||||||||||||||||||||||||||||||
Sbjct: 238 tatcgcagtcttgcctatgaaggcaaagcttttc 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 518
Length of database: 918
Length adjustment: 10
Effective length of query: 508
Effective length of database: 908
Effective search space: 461264
Effective search space used: 461264
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no509_f03.g1 MSMg01no509_f03.g1 CHROMAT_FILE:
MSMg01no509_f03.g1 PHD_FILE: MSMg01no509_f03.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:38:31 2005
(366 letters)
>mm_chr18_53450930_53451694
Length = 765
Score = 685 bits (354), Expect = 0.0
Identities = 360/362 (99%), Gaps = 1/362 (0%)
Strand = Plus / Plus
Query: 1 ttttccacttacaactttttagatcagtaatacttatttaaaaaaaacccctaaatcaag 60
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 201 ttttccacttacaactttttagatcagtaatacttatttaaaaaaa-cccctaaatcaag 259
Query: 61 cccctttggcagtgtaacaccacgcagaatgccccatgccctgatcatgaggtcagggct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 cccctttggcagtgtaacaccacgcagaatgccccatgccctgatcatgaggtcagggct 319
Query: 121 caagtgtctttgccacgggtgtctggagggaatattgaacccatgtatgataggtcctga 180
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 320 caagtgtctttgccacgggtgtctggagggaagattgaacccatgtatgataggtcctga 379
Query: 181 cagcaaatatttgatggtatgggctcagactttctgtttttgagttttctagactggaaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 cagcaaatatttgatggtatgggctcagactttctgtttttgagttttctagactggaaa 439
Query: 241 aggacatgagcgatatcaaggttatataaggggtttgagctgaatctataatgtcttatt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 aggacatgagcgatatcaaggttatataaggggtttgagctgaatctataatgtcttatt 499
Query: 301 tgtttgtttgtttttaaagaattattactgtgtatgtatgtgtgggggggtgagggtagg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 tgtttgtttgtttttaaagaattattactgtgtatgtatgtgtgggggggtgagggtagg 559
Query: 361 gg 362
||
Sbjct: 560 gg 561
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 366
Length of database: 765
Length adjustment: 9
Effective length of query: 357
Effective length of database: 756
Effective search space: 269892
Effective search space used: 269892
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
