BAC Information

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BAC

Clone NameMSMg01-509H15
Chromosome18 (Build37)
Map Location 73,191,228 - 73,191,599
singlet/doubletsinglet
Overlap genenone
Upstream geneDcc, LOC629684, LOC100043411
Downstream geneLOC100042955, Rkhd2, Smad4, Elac1, Me2, Mro, Mapk4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-509H15.T7 (MSMg01no509_h15.b1)MSMg01-509H15.TJ (MSMg01no509_h15.g1)
ACCAG583143AG583144
length750760
length of high quality
(start - end)
704 (47 - 750)373 (324 - 696)
definitionCHROMAT_FILE: MSMg01no509_h15.b1 PHD_FILE: MSMg01no509_h15.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:38:43 2005CHROMAT_FILE: MSMg01no509_h15.g1 PHD_FILE: MSMg01no509_h15.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:38:43 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
AACTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGCGCG
GAATTCTCTGTTTACTCTATGTACCTCATCTTTAATTGGGTTATTTAGGT
TTGTGTTGTCTAACTTCTTCGGTTCTTTATAAATTTTGGCTATTAGCCCT
CTTTCAGATGTAGGATTGGTGAAGATTCTTTCCAATCTGTAGGCTGCCAT
TTTGTCCCATGGGCAGTCTCCTTTGCCTTTCAGAGCTTTTCAAGCTCAGG
AGACCCTCATTTATCATTTGTTAGAGCCTGAGAGGTTTGTGTTCTGTTCA
GGAAGTTGTCTCCTCTATTTATGAGTTCAAGGTTATTATATACTTTCTGC
TTTATTAGATTTAGTGTATCTGTTTTTACATTGAAGTCTCTGATCCACTT
GAATTTTCTTCAGGGTGATAAATATGGATCTATTTGCATTCTTCTACATG
GAGACATCCACTTAGACTAGTACATTTTGTTGAGAAAGCTTTCTTTTTTC
CATGATATGGTTTTGCATTCTTTATTAAAAATCAAGTTTCCCCTCCTTTT
TTGATAAAGTATGTGAGTTTACTTTAGGTTCTTCAATTTGATTCCATTGA
TCAACCTGTCTACTCCTATACAAACAGCATGTAGTGTTTATTACTATTAC
TCTGTAGTACAGCTTGAGGTCAGGGATGGTGATACCTCTGGAAATTTTTA
TTATACAGGATTGATTTAGCTATCCTGAGCTTTATGGTTTTCTATATGAA

CACGATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTTGACTTATGGTGATGTTGGCAAAAC
TGGCAATGGCTAGACTCTACAGCTCTCTGTAAAGTAGGTCGTGAAAATTG
GAACTGCTCTCAAGAACAATGAAAATATTTGAATAATTTTCAGCTGAAGA
CTGATATGACTCAATGTGTGTTTCAGAAAACAACAACCAGGTTCTGGTCT
GGAGAAGAGATCAGAAGGGTGTCATGGAACAGGTGGGTCAAGAACCAATT
ATCTGGTTTAGTTACCTGGTATGTGGTGTGGTTTAAACAGTTGCCTCTGA
CATTGCTACAGAAGGTGTCTGTTCCAGAAGCATAGACAACCTACTCATAA
TGTGACCACATGGGCATGCTGGAGAATTGGATGTAAGGGGGAGGGCTTGA
TGAGTGAGTCTCATACTTCTGCTTTTCACAGGGGAGGAAATAGCAGGCAC
TGTACTAGTACCTCTTGTCCTTTCGTGGTTGTGCACACATTCATGTACAT
GCTAGACAGTGATGTACAATGGGAGAATCTTGATTATTTGCCTGCTGTGT
CCCCTTGGGTCATCCATATGTGTATACCATTAACTACATTATGAGCTCTT
TGTACTGGGAAATATTTTTTTCTCCCCTCTGAATGCAACCCTGAGCATAG
ATCATAAATTTGTTTATTACAAGTGGCTTTCCATACATGGGAAAAATTAC
TACTCTCACA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no509_h15.g1 MSMg01no509_h15.g1 CHROMAT_FILE:
MSMg01no509_h15.g1 PHD_FILE: MSMg01no509_h15.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:38:43 2005
         (373 letters)



>mm_chr18_73191028_73191799
          Length = 772

 Score =  675 bits (349), Expect = 0.0
 Identities = 367/373 (98%), Gaps = 1/373 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tggtgtggtttaaacagttgcctctgacattgctacagaaggtgtctgttccagaagcat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||
Sbjct: 572 tggtgtggtttaaacagttgcctctgacattgctacagaaggtgtctgtcccagaaacat 513

                                                                       
Query: 61  agacaacctactcataatgtgaccacatgggcatgctggagaattggatgtaagggggag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 512 agacaacctactcataatgtgaccacatgggcatgctggagaattggatgtaagggggag 453

                                                                       
Query: 121 ggcttgatgagtgagtctcatacttctgcttttcacaggggaggaaatagcaggcactgt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 452 ggcttgatgagtgagtctcatacttctgcttttcacaggggaggaaatagcaggcactgt 393

                                                                       
Query: 181 actagtacctcttgtcctttcgtggttgtgcacacattcatgtacatgctagacagtgat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 392 actagtacctcttgtcctttcgtggttgtgcacacattcatgtacatgctagacagtgat 333

                                                                       
Query: 241 gtacaatgggagaatcttgattatttgcctgctgtgtccccttgggtcatccatatgtgt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 332 gtacaatgggagaatcttgattatttgcctgctgtgtccccttgggtcatccatatgtgt 273

                                                                       
Query: 301 ataccattaactacattatgagctctttgtactgggaaatatttttttctcccctctgaa 360
           || |||||||||||||||||||||||||||||||||||||| |||||||||| || ||||
Sbjct: 272 atgccattaactacattatgagctctttgtactgggaaata-ttttttctcctctttgaa 214

                        
Query: 361 tgcaaccctgagc 373
           |||||||||||||
Sbjct: 213 tgcaaccctgagc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 373
Length of database: 772
Length adjustment: 9
Effective length of query: 364
Effective length of database: 763
Effective search space:   277732
Effective search space used:   277732
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)