BAC Information

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BAC

Clone NameMSMg01-509L05
Chromosome18 (Build37)
Map Location 24,879,159 - 24,879,838
singlet/doubletsinglet
Overlap geneFhod3
Upstream geneMapre2, EG665813, LOC100040623, Zfp397, C230097I24Rik, Zfp35, Zfp191, D030070L09Rik, Galnt1, LOC665586, 2700062C07Rik, BC021395, Slc39a6, Epl2, Mocos
Downstream gene5730494M16Rik, AW554918, Brunol4, LOC100041241
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-509L05.T7 (MSMg01no509_l05.b1)MSMg01-509L05.TJ (MSMg01no509_l05.g1)
ACCAG583315AG583316
length744754
length of high quality
(start - end)
696 (49 - 744)331 (329 - 659)
definitionCHROMAT_FILE: MSMg01no509_l05.b1 PHD_FILE: MSMg01no509_l05.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:39:01 2005CHROMAT_FILE: MSMg01no509_l05.g1 PHD_FILE: MSMg01no509_l05.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:39:01 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NAAACTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCCTGACCTGCGCCTATAGCAGTCACCAGGTAGTCTCCCAAGTG
TTCTCCATGCAAACTCCTCCGCATATGAGTGTTGGATTGAGATTGGAAAG
CCACTGGGAAGTTCCAATTGTCATGATGTGTGCATGAGCTATCATGCCAT
CACTGTAGGTGACACTCCTATATCTGTGACTCAGGAAGGTAGTCAGATGT
ATAATTTTATATCCATAGATAGCAGAGTTCTGATGAGACACACAGTGTTG
AATGGCTCTCTATGGTGGGATATTATCAACCCAAATGCAACAGAAAACAG
GGACACCTGGCCTCACCTTGCCACCCTGACCCTTCTGTAGAGGCGGGACT
TTCTTGTCTGAGGACTTGGCATAGATCCAGCATGGAGAACTTGCCTCTGC
CACACTCACCTTCAGTTTGAGAAGTTGTAACATACAATAAGCGAGTTGGT
AGATTAAAGACCTGACAATGGTCTGAGAATACAAGACCTACCATGGGTAT
AAGCATTTTACATATATATTGTCCCCTTTTAATATAGCTCTTTTAAATAT
TAAAAATATTTACTAAAGGCAATTACCTATCAGGACCTCAGAACTCTATT
GAAAGGAGTTCAGATATGTGTCTTTTTGCTGGGCTTTGAACCTTGGTGGG
AGACATTGACACTGAACACAGTAAGAACTAGAGAGTCCTTGGCN
CCAACGATTGAATGNGTAGGCCGGGNGGNCGCCCGTTTCGAATATGGAGG
NGAACTATAGAAGTACAAAAATAAGTCACTAGNCTACGATGATGATGTTT
TCCATCCTCCCGAAGCAATCTGGTCTGGTAGAAAGATGGAATGGCCTTTT
GAAGCTCAGTTACTGTGCCAATTAGGTGGCAGCAGCATGGAGGGCTGGGG
CAGAGTTCTTCAGAAGGCAGTATATGCTTTTAATCAGCGTCCGATATATG
GTTTTTCTCTCCCACAACCAGGATCCATGGGTCCGGGAATCAAGGGGTGG
AAAAGGGAAATAGTTCCATCCTTGANCTCTCCTAGTGACCCTCTAGGAAA
ATTTTTGCTTCCTGTCCCTACAACCCTAGATTCTGCTGGCCTAGAAGTTT
TTGGTTCCAGAGGGTACACCGCTCCTACCAGGAGCCACAACAAACATTCC
ATTGAACTGGAAGCTCAGAATTCTCCCTGGTCATTTTGGGCTTCCAATGC
CCTTAAACCAACAGGGTAAGAGAGGAATAACAGTTAGGAGGGGTGATAGA
TCCAGATTACCATGGGGACATTGGATTGCCTCTCCACAATGGAGGTGAGC
AGGATTATGTCTGGAGTGCAGGAGAGCCCTTAGGGCATCTCTCAGTACTA
CCTTGTCCTATGATTAAAATCATTGGGAAAAAACAACATCCTAATCCAAG
CAGGATGACAAAGAATGCAGACCCATCACGAATGAAGGATGGGTCACTTC
TCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no509_l05.b1 MSMg01no509_l05.b1 CHROMAT_FILE:
MSMg01no509_l05.b1 PHD_FILE: MSMg01no509_l05.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:39:01 2005
         (696 letters)



>mm_chr18_24879065_24880160
          Length = 1096

 Score = 1212 bits (627), Expect = 0.0
 Identities = 670/691 (96%), Gaps = 11/691 (1%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcctgacctgcgcctatagcagtcaccaggtagtctcccaagtgttctccatgcaa 64
           |||||||||||||| ||||| |||||||||||||||           |||||||||||||
Sbjct: 774 gaattcctgacctgggcctagagcagtcaccaggta-----------gttctccatgcaa 726

                                                                       
Query: 65  actcctccgcatatgagtgttggattgagattggaaagccactgggaagttccaattgtc 124
           ||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 725 actcctctgcatatgagtgttggattgagattggaaagccactgggcagttccaattgtc 666

                                                                       
Query: 125 atgatgtgtgcatgagctatcatgccatcactgtaggtgacactcctatatctgtgactc 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 665 atgatgtgtgcatgagctatcatgccatcactgtaggtgacactcctatatctgtgactc 606

                                                                       
Query: 185 aggaaggtagtcagatgtataattttatatccatagatagcagagttctgatgagacaca 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 605 aggaaggtagtcagatgtataattttatatccatagatagcagagttctgatgagacaca 546

                                                                       
Query: 245 cagtgttgaatggctctctatggtgggatattatcaacccaaatgcaacagaaaacaggg 304
           |||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||
Sbjct: 545 cagtgttgaatggctctctatggtgggagaatatcaacccaaatgcaacagaaaacaggg 486

                                                                       
Query: 305 acacctggcctcaccttgccaccctgacccttctgtagaggcgggactttcttgtctgag 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 acacctggcctcaccttgccaccctgacccttctgtagaggcgggactttcttgtctgag 426

                                                                       
Query: 365 gacttggcatagatccagcatggagaacttgcctctgccacactcaccttcagtttgaga 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 gacttggcatagatccagcatggagaacttgcctctgccacactcaccttcagtttgaga 366

                                                                       
Query: 425 agttgtaacatacaataagcgagttggtagattaaagacctgacaatggtctgagaatac 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 agttgtaacatacaataagcgagttggtagattaaagacctgacaatggtctgagaatac 306

                                                                       
Query: 485 aagacctaccatgggtataagcattttacatatatattgtccccttttaatatagctctt 544
           ||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 305 aagacctaccaagggtataagcattttacatatatattgtccccttttaatataactctt 246

                                                                       
Query: 545 ttaaatattaaaaatatttactaaaggcaattacctatcaggacctcagaactctattga 604
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 245 ttaaatattaaaaatatttactaaaggcaattacctatctggacctcagaactctattga 186

                                                                       
Query: 605 aaggagttcagatatgtgtctttttgctgggctttgaaccttggtgggagacattgacac 664
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 185 aaggagttcagatatgtgtctttttgctgggctttgaaccttggtgggagacattgacat 126

                                          
Query: 665 tgaacacagtaagaactagagagtccttggc 695
           |||||||||||||||||||||||||||||||
Sbjct: 125 tgaacacagtaagaactagagagtccttggc 95


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 696
Length of database: 1096
Length adjustment: 10
Effective length of query: 686
Effective length of database: 1086
Effective search space:   744996
Effective search space used:   744996
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)