Query= MSMg01no509_o02.b1 MSMg01no509_o02.b1 CHROMAT_FILE:
MSMg01no509_o02.b1 PHD_FILE: MSMg01no509_o02.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:39:16 2005
(584 letters)
>mm_chr18_3909926_3910907
Length = 982
Score = 1017 bits (526), Expect = 0.0
Identities = 568/583 (97%), Gaps = 2/583 (0%)
Strand = Plus / Plus
Query: 1 aagagaacagnacttaatagttttgcattttctattagaaggaaacttgcttggagaaaa 60
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 201 aagagaacagtacttaatagttttgcattttctattagaaggaaacttgcttggaggaaa 260
Query: 61 actgatttcccatttgtttcagaaatgtcatttccagaattatcagatacaaatcatttc 120
|||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 261 actggtttcccatttgtttcagaaatgtcctttccagaattatcagatacaaatcatttc 320
Query: 121 agagcatgctgtttcaaaatttacataaaaaactattgatgagtgagggccatgatttga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agagcatgctgtttcaaaatttacataaaaaactattgatgagtgagggccatgatttga 380
Query: 181 agttagtaaatactattccttttaaaagaacacagataggagagcaatatgatagtatag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agttagtaaatactattccttttaaaagaacacagataggagagcaatatgatagtatag 440
Query: 241 tgtacctgagtataaaacaccattttctcccatatttccaggacaaaaatgctagttttg 300
|||||||||| |||||||||||||| ||||||||||||||||| |||||||||||||||
Sbjct: 441 tgtacctgaggataaaacaccatttcctcccatatttccaggatgaaaatgctagttttg 500
Query: 301 aaggtaactgggaaataagatggtgccttaaacttcacagggagacccttttttttaatg 360
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 501 aaggtaactgggaaataagatggtgccttaaacttcacagggagat--ttttttttaatg 558
Query: 361 tagagtttttaaaatttttttattagatattttcttcatttacatttcaaatgctatccc 420
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 tagagtttttaaaaattttttattagatattttcttcatttacatttcaaatgctatccc 618
Query: 421 aaaagtgccctataccctcccctgccctgctcccctaccttaacttagagtttttaagac 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 aaaagtgccctataccctcccctgccctgctcccctaccttaacttagagtttttaagac 678
Query: 481 tgcacttttattttgaggtggaccattaacctattctgtaaccaggtcctagacaaacca 540
|||||||||||||||||||||||||||||||||||||||| ||||||||||| || ||||
Sbjct: 679 tgcacttttattttgaggtggaccattaacctattctgtagccaggtcctaggcacacca 738
Query: 541 attttcctcagtgccagctgtcttgcttcctgtgtcacatgac 583
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 739 attttcctcagtgccagctgtcttgcttcctgtgtcacatgac 781
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 584
Length of database: 982
Length adjustment: 10
Effective length of query: 574
Effective length of database: 972
Effective search space: 557928
Effective search space used: 557928
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no509_o02.g1 MSMg01no509_o02.g1 CHROMAT_FILE:
MSMg01no509_o02.g1 PHD_FILE: MSMg01no509_o02.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:39:17 2005
(288 letters)
>mm_chr18_4076145_4076832
Length = 688
Score = 530 bits (274), Expect = e-155
Identities = 283/286 (98%)
Strand = Plus / Minus
Query: 1 tccccaaattacctccaagaattacctgcttatctggaagtcccatcagtgtaattttaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 486 tccccaaattacctccaagaattacctgcttatctggaagtcccatcagtgtaattttaa 427
Query: 61 ggaattttgttttcattgggcggctctgagcctttgaacttctctgccttaattctacag 120
||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 426 ggaattttgttttcattcggcggctctgagcctttgaacttctgtgccttaattctacag 367
Query: 121 tctttccacaggaaaggcttgagaacgggcactcttcaatgcttttccttgtaaatgctg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 tctttccacaggaaaggcttgagaacgggcactcttcaatgcttttccttgtaaatgctg 307
Query: 181 aggacagtattcttctttctactctggtccatgtgatcccagctccaaaggaaagtagat 240
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 306 aggacagtattcttctttctactctggtccacgtgatcccagctccaaaggaaagtagat 247
Query: 241 cgtcaagattaggccagtttagtctggaaaggagactagttatgag 286
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 246 cgtcaagattaggccagtttagtctggaaaggagactagttatgag 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 288
Length of database: 688
Length adjustment: 9
Effective length of query: 279
Effective length of database: 679
Effective search space: 189441
Effective search space used: 189441
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
