BAC Information

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BAC

Clone NameMSMg01-509P01
Chromosome18 (Build37)
Map Location 23,494,013 - 23,494,430
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040547, Asxl3, Nol4, LOC100040579, LOC665797
Downstream geneDtna, Mapre2, EG665813, LOC100040623, Zfp397, C230097I24Rik, Zfp35, Zfp191, D030070L09Rik, Galnt1, LOC665586
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-509P01.T7 (MSMg01no509_p01.b1)MSMg01-509P01.TJ (MSMg01no509_p01.g1)
ACCAG583496AG583497
length756752
length of high quality
(start - end)
89 (330 - 418)419 (334 - 752)
definitionCHROMAT_FILE: MSMg01no509_p01.b1 PHD_FILE: MSMg01no509_p01.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:39:22 2005CHROMAT_FILE: MSMg01no509_p01.g1 PHD_FILE: MSMg01no509_p01.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:39:22 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GGGACGATXXXXXXXXXXXXXXXXXXXXXXXXXXTAATCGAGAAGACCGC
GGAATTCTCCTAATTTCTGAGTGAGTGTGNGTGTGTGTGTGTGTGTGAGT
TAGATAAGCTAATAGAATGAACTGTATATTGAGTTGGTTAGTAGTGGTGT
ACACCTTTGATTCCAGCTCTTGGGAGGTAGAGGCAGAGAAACCCTGCCCT
GCCCTCCCCCAAGTACACACACAAGAAGAATGAACTGTACAGTATCATGT
ATTTTAAACATGGTATAGTTAAGTGAACATGCTTTTTTTTTTTTTTATCA
ATTCTACCCTGTCTGTACAATTCTTTGTTTTTTTGGTTTTTTGTTTGCTT
GTTTTGTTTTTTGTTTTTTGGTTTTTTTTTTGTTTTGTTTTGTTTTGTTT
TTTTTTTTTGGCAACTTCACATACACCTGCAGAGAACTGGGAAAAGGGAA
TCTTAACAGCAAAAAATGCCTCCATAATATTGACCTGTAGGCAAATCTGT
AGAACATTCTCTTGATTCATGATTTCTGTGCTTGGACCCCATTCACTGTG
GGTAGCATCATCTCAGGACAAGCCATTCATGGTCCTGGCGTGTACAGGAA
AGCAGGTTGACCAAGGTAGTGGACAGCATTCTCCCACGGGCTGCGCTTCA
GATCCTGCCTCTAGTGTTCTATCTTGAGATTCCGCCATGACTTTCATGCG
TGCTAAACCACTATTGCAAGCTGAAATGAAGTTCTTCTTTGCCAGGTGCT
TCTATC
CACGATGATAGTGGGTAGGCCGGGNGGNNGCCCGTTTTCAAACATGCGGG
TGACANNANAGAAGTTTCCGCAAAATTGGCACCTACACAAACATGCACAC
ACAGCACACACACACACACACACACACACACACACACACACATGCAATAA
ACAAGAGCTTTTAGCTCATCAGAGCCTCTTTGTGTGACTATATCTGAAGT
TATGACTGACCTAATATATCTTAGCCATCTCGATAACTCTTAAAGACATC
AGCACAGTTTCCAGTGTTCAATAGATGCAGATTTTTCTCATGTAAAGACA
GGCATGCATTTCTACAATATTTTATAATAGTTTTCAGGCTTACACATATT
TAAAGCTTTTTCTCATTTTTTTGTCCTTTGAGAACTTTGTGCTGTGTTTA
TGGGTAGTAAGATCAAGGGACTGCACTTTTGACCAACATGTCAATGGTTA
GTTACATCTTAATAAGACCAGAACAACATCACAGCCAGAGAACCACAAAA
ACCATTGAGCTTCTCAGATTGTAATTGACGAATATGTGCTGGTGGGGTTT
TGTGTGTGTATTTTTATCACATGATTATCCCTACAATTCCTCTACCTCAA
AGAATGTCTCTCACCACATGCTCACTGGACTGCCTCTCACAGCCACTACA
GACCTCTCGTTCTCTATTCCTCTGCTCACAGGCTAACTGACTGCTCTAGG
ATTTTGCCAATTTAAAGTTTTACATAAATGTAACTAACTGCTATATTAAA
AA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no509_p01.g1 MSMg01no509_p01.g1 CHROMAT_FILE:
MSMg01no509_p01.g1 PHD_FILE: MSMg01no509_p01.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:39:22 2005
         (419 letters)



>mm_chr18_23493813_23494630
          Length = 818

 Score =  779 bits (403), Expect = 0.0
 Identities = 415/419 (99%), Gaps = 1/419 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcaggcttacacatatttaaagctttttctcatttttttgtcctttgagaactttgtgct 60
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 201 tcaggcttacacatatttaaagctttttctcatttttt-gtcctttgagaactttgtgct 259

                                                                       
Query: 61  gtgtttatgggtagtaagatcaagggactgcacttttgaccaacatgtcaatggttagtt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 gtgtttatgggtagtaagatcaagggactgcacttttgaccaacatgtcaatggttagtt 319

                                                                       
Query: 121 acatcttaataagaccagaacaacatcacagccagagaaccacaaaaaccattgagcttc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 acatcttaataagaccagaacaacatcacagccagagaaccacaaaaaccattgagcttc 379

                                                                       
Query: 181 tcagattgtaattgacgaatatgtgctggtggggttttgtgtgtgtatttttatcacatg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 tcagattgtaattgacgaatatgtgctggtggggttttgtgtgtgtatttttatcacatg 439

                                                                       
Query: 241 attatccctacaattcctctacctcaaagaatgtctctcaccacatgctcactggactgc 300
           ||||||||||||||||||||||||||||||||||||||  ||||||| ||||||||||||
Sbjct: 440 attatccctacaattcctctacctcaaagaatgtctcttgccacatgttcactggactgc 499

                                                                       
Query: 301 ctctcacagccactacagacctctcgttctctattcctctgctcacaggctaactgactg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 ctctcacagccactacagacctctcgttctctattcctctgctcacaggctaactgactg 559

                                                                      
Query: 361 ctctaggattttgccaatttaaagttttacataaatgtaactaactgctatattaaaaa 419
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 ctctaggattttgccaatttaaagttttacataaatgtaactaactgctatattaaaaa 618


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 419
Length of database: 818
Length adjustment: 9
Effective length of query: 410
Effective length of database: 809
Effective search space:   331690
Effective search space used:   331690
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)