Query= MSMg01no509_p10.b1 MSMg01no509_p10.b1 CHROMAT_FILE:
MSMg01no509_p10.b1 PHD_FILE: MSMg01no509_p10.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:39:24 2005
(663 letters)
>mm_chr18_9243097_9244159
Length = 1063
Score = 1205 bits (623), Expect = 0.0
Identities = 653/663 (98%)
Strand = Plus / Plus
Query: 1 agttggatttcatatgaaggaaagggctaagtcgtagtattttaggtttaaaaccactca 60
||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||
Sbjct: 201 agttggatttcatatgaaggaaagggctaagtcatagtattttaggtttaaaatcactca 260
Query: 61 tatactcttatgactagcaggtccttattctgtattatggtttcttatattttaatattt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tatactcttatgactagcaggtccttattctgtattatggtttcttatattttaatattt 320
Query: 121 gcacttcaaaattctcaaaggatttagctggtctgagatcaaagactagattcttctaaa 180
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 321 gcacttcaaaattctcaaaggatttagctggtctgagatcaaagactagattcttccaaa 380
Query: 181 ttactcaaaaccttttaagtctgattttagtctaattaaaggatgaatgtggcacattcc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttactcaaaaccttttaagtctgattttagtctaattaaaggatgaatgtggcacattcc 440
Query: 241 ttgtaattttccaacataatgtcatgtcagctgaagaagccttagtgaaggactatcata 300
|| || |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 atgaaactttccaacataatgtcatgtcagctgaagaagccttagtgaaggactatcata 500
Query: 301 gatgattctgaattcaataaagtaaagatagagtagagatttaccaataccataccataa 360
||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||
Sbjct: 501 gatgattctgaattcaataaagtaaagatagagtagagatttatcaatgccataccataa 560
Query: 361 actgttcattagctccagtgagaagaatcaaggcagaaataaaaggttataatcccatct 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 actgttcattagctccagtgagaagaatcaaggcagaaataaaaggttataatcccatct 620
Query: 421 ggactgtcagttatttccctcataaaaccaaggcttttcaagagacaacaggccaatgct 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ggactgtcagttatttccctcataaaaccaaggcttttcaagagacaacaggccaatgct 680
Query: 481 gctgcatccactgccttgcatgcttcttaagacacatatgtacttgcatcaccatcagac 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gctgcatccactgccttgcatgcttcttaagacacatatgtacttgcatcaccatcagac 740
Query: 541 tggagtacccaccacatttgaaatgagaaccaatttgagaagtgagtatcttccatgtcc 600
||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 741 tggggtacccaccacatttgaaatgagaaccaatttgagaagtgagtatctttcatgtcc 800
Query: 601 ctcctgcccacttcctatgtccttctttcatgggaactctgctttttgcatttcttttct 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 ctcctgcccacttcctatgtccttctttcatgggaactctgctttttgcatttcttttct 860
Query: 661 cag 663
|||
Sbjct: 861 cag 863
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 663
Length of database: 1063
Length adjustment: 10
Effective length of query: 653
Effective length of database: 1053
Effective search space: 687609
Effective search space used: 687609
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no509_p10.g1 MSMg01no509_p10.g1 CHROMAT_FILE:
MSMg01no509_p10.g1 PHD_FILE: MSMg01no509_p10.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:39:24 2005
(327 letters)
>mm_chr18_9441568_9442294
Length = 727
Score = 567 bits (293), Expect = e-166
Identities = 317/325 (97%)
Strand = Plus / Minus
Query: 1 aggcagactgttgagatagatagaaggtgaagtcaggattatattttattttcttcagag 60
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 525 aggcagactgttgagatagatagaaggtgaagttaggattatattttattttcttcagag 466
Query: 61 aatggggtttgaaatgtgtgtaaataccccccacattagatgtttgctgtccctggagag 120
|||||||||||||||||||||||||| | | ||||||||||||||||||||||||||
Sbjct: 465 aatggggtttgaaatgtgtgtaaatatgctgtatattagatgtttgctgtccctggagag 406
Query: 121 gggcattgtgtgtaaagataagttctaccagtcttatcaggtcgttaggcattccataac 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 405 gggcattgtgtgtaaagataagttctaccagtcttatcaggtcgttaggcattccataac 346
Query: 181 atttcttttaggaatgagtctggctagatccacagtttcagaaagctcagaaaataaatt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 345 atttcttttaggaatgagtctggctagatccacagtttcagaaagctcagaaaataaatt 286
Query: 241 atctactgtttctcagttccgtaaacgacttgtgtttgttgctgtaactccctaacttcg 300
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 285 atccactgtttctcagttccgtaaacgacttgtgtttgttgctgtaactccctaacttcg 226
Query: 301 gagaaaagtgacctgccataataaa 325
|||||||||||||||||||||||||
Sbjct: 225 gagaaaagtgacctgccataataaa 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 327
Length of database: 727
Length adjustment: 9
Effective length of query: 318
Effective length of database: 718
Effective search space: 228324
Effective search space used: 228324
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
