BAC Information

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BAC

Clone NameMSMg01-509P13
Chromosome18 (Build37)
Map Location 40,506,091 - 40,506,340
singlet/doubletsinglet
Overlap geneKctd16
Upstream geneArhgap26, Nr3c1, Pabpc2, LOC100041939, Yipf5
Downstream geneEG225416, LOC677182
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-509P13.T7 (MSMg01no509_p13.b1)MSMg01-509P13.TJ (MSMg01no509_p13.g1)
ACCAG583520AG583521
length742759
length of high quality
(start - end)
224 (424 - 647)244 (80 - 323)
definitionCHROMAT_FILE: MSMg01no509_p13.b1 PHD_FILE: MSMg01no509_p13.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:39:24 2005CHROMAT_FILE: MSMg01no509_p13.g1 PHD_FILE: MSMg01no509_p13.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:39:24 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NACCAATAATTGCGGCGCGAAACGAATCCTATTTCGTACTGGGGGCGGAA
NNCANGNACTAACAGTACCTAGGNGGGNAGAAAANAANTTTCTTTGTAAT
CATCTATTGCCTCTAAATCTCCCAATCTTTCTACTTCCTTTTCTGTAATT
ATTCCTGAACTTTGAGGGGAGGGTATGTGATACAGATGTTCCATTTAAAG
CAGAACACCCCATAGTATCTTCCTCTCTATATTTTGACCAGTTTCCTTTT
TAATCATGATGTCCTGCAAAAACAAGCTTCTCTGATGAGGGTGGAGAGAA
GCACAGATGTATTTTGTGATTTTTATGNCATTAAGAGTGGGTTTAATCTT
GTGTTCCTTTAGCAAGTAGTAGTACTAGCTTCTCCTCTAGGATCTATATC
CCATCAATCCACACCTTCTTCACCCTGATTCTAGTGACAGGTATGACTCC
CTTCTTGTAGAAAGAACTTCAAATCCCGTCAGAAAATGGTTGGTTATTTC
CATGATATTCAAGCCACTATTTGTACTGATGGGCATCTTTTACCAGTCAG
TTATTATAACTCACGTTTTTCACACCTGGATAAAACTAATAATTACTTCT
CTCCTCATTGGAACTGGAGGCACTTTCCAGCACTATAAAAGCTAACTATT
AGGTATGAATTTTCAAGGTGAGCACTAGTTGGGGTTTCTCTGTAGTCTAT
GACTCAAGTGGGTGACATACTTTAACAGCAGCATATTACTGG
CCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXTTCCCGCAAAAATTCCATAGCACAATCAGATGCTTA
ATTAACTAATTAATTAATTAGTGCAAAAAAAAAAAAACCAAAATGAAACA
AAACAAACAAACAAAAAAAAAACCTCAGCATGGACCACAGTGATATGTTT
GTAAGAGTCTATATCTCTAACTCAGGAATGTGAGGAAAATGTAAGACAAA
GGAACTTTTAAAAAGGAAAAGATGCATTCTCTCATACACTTGGGATATAT
TTATTCCAAATAAATTGTACAGATTTTTTACATCTATGAACAAAATGAGA
CAAACAATGCAAAAATATCAAGCCCCATTCTCCAGGATTCATGACAAATT
AATCCTCCCTGACAGCTGGCCACAATGAATTTTTTTTTTAAAAAAAGGAA
ACAAAACAAAATCAAACAAACAGACTCTTCCTCAAGAGATACTGCATTAA
AGACAGGCGACTGTCATAACTATCATCTATTCTCCAAAGGCTTGACCCTA
TGGTTGAACAAAGAAACAAAATTCTCCAATTCTAAAGCCTGCTCTATCTG
GTTTTCTGTTTTGAAGAAGTGGAGCATGAATACAAATGGTTTTCCTTGCA
CGTGTGATGTCAGGACACCTCACCAGAATGTTATCATTGCCAACCACAGC
CACAAATCACCACCATTCCAGACCATAACCCTAACAGTACCAGTGGAAAG
GCAGAGTAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no509_p13.g1 MSMg01no509_p13.g1 CHROMAT_FILE:
MSMg01no509_p13.g1 PHD_FILE: MSMg01no509_p13.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:39:24 2005
         (244 letters)



>mm_chr18_40505798_40506441
          Length = 644

 Score =  408 bits (211), Expect = e-118
 Identities = 238/255 (93%), Gaps = 16/255 (6%)
 Strand = Plus / Minus

                                                                       
Query: 1   catagcacaatcagatgcttaattaactaattaattaattagtgcaaaaaaaaaaaaacc 60
           |||||||||||||||||||||||||||||||||||||||||||||    |||||||||||
Sbjct: 543 catagcacaatcagatgcttaattaactaattaattaattagtgc----aaaaaaaaacc 488

                                                                       
Query: 61  aaaatgaaa-caaaacaaacaaac----------aaaaaaaaaacctcagcatggaccac 109
           ||||  ||| ||||||||||||||          ||||||||||||||||||||||||||
Sbjct: 487 aaaa-caaaccaaaacaaacaaacaaaaaaaaaaaaaaaaaaaacctcagcatggaccac 429

                                                                       
Query: 110 agtgatatgtttgtaagagtctatatctctaactcaggaatgtgaggaaaatgtaagaca 169
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 agtgatatgtttgtaagagtctatatctctaactcaggaatgtgaggaaaatgtaagaca 369

                                                                       
Query: 170 aaggaacttttaaaaaggaaaagatgcattctctcatacacttgggatatatttattcca 229
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 aaggaacttttaaaaaggaaaagatgcattctctcatacacttgggatatatttattcca 309

                          
Query: 230 aataaattgtacaga 244
           |||||||||||||||
Sbjct: 308 aataaattgtacaga 294


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 244
Length of database: 644
Length adjustment: 9
Effective length of query: 235
Effective length of database: 635
Effective search space:   149225
Effective search space used:   149225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)