Query= MSMg01no510_a19.b1 MSMg01no510_a19.b1 CHROMAT_FILE:
MSMg01no510_a19.b1 PHD_FILE: MSMg01no510_a19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:39:31 2005
(596 letters)
>mm_chr18_20651743_20652738
Length = 996
Score = 1106 bits (572), Expect = 0.0
Identities = 591/598 (98%), Gaps = 2/598 (0%)
Strand = Plus / Plus
Query: 1 tctagactgggaaatatagcaagaccatgtgtcagagaggtgaggagtggggaagacaca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tctagactgggaaatatagcaagaccatgtgtcagagaggtgaggagtggggaagacaca 260
Query: 61 gaaaaaggggaagaagaaagtgaacacaaaataggcagtaaagctgaatgttagacaaat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gaaaaaggggaagaagaaagtgaacacaaaataggcagtaaagctgaatgttagacaaat 320
Query: 121 gaatactctgtggctctctctcctgccaaaccacaagcatcaaagttaaccacggctgtg 180
||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||
Sbjct: 321 gaatactctgtggctctctctcctgccaaaccacaagcatcaacgttaaccaaggctgtg 380
Query: 181 actgtgaaagtcaaggggattgctagccagcagcaaatctgcatccgcaaatctgcagca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 actgtgaaagtcaaggggattgctagccagcagcaaatctgcatccgcaaatctgcagca 440
Query: 241 aactcattgttccctctagaccaattcagtccaggcaccacccacctgcagccagtgtca 300
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aactcagtgttccctctagaccaattcagtccaggcaccacccacctgcagccagtgtca 500
Query: 301 acctcagaagctcagggttgggttcccaggctgcccacacatgctttggacatcagtaac 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 acctcagaagctcagggttgggttcccaggctgcccacacatgctttggacatcagtaac 560
Query: 361 aaactccggattgtgtcaccgttcttctgagccacccattagaaatcaacttcctcctcc 420
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aaaccccggattgtgtcaccgttcttctgagccacccattagaaatcaacttcctcctcc 620
Query: 421 gggttccattaatttgctccagaagctctgagagctcgggaaaaccttttctaggctttg 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gggttccattaatttgctccagaagctctgagagctcgggaaaaccttttctaggctttg 680
Query: 481 ctgtaaaggatactaaaaaggacacaggtagagagagagaga--tgaagagggtaaagtc 538
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 681 ctgtaaaggatactaaaaaggacacaggtagagagagagagagatgaagagggtaaagtc 740
Query: 539 taggagaaggaacaggaagccccagtaccctctttaaagtctggatcgtcccattgat 596
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 741 taggagaaggaacaggaagccccagtaccctctttaaagcctggatcgtcccattgat 798
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 596
Length of database: 996
Length adjustment: 10
Effective length of query: 586
Effective length of database: 986
Effective search space: 577796
Effective search space used: 577796
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no510_a19.g1 MSMg01no510_a19.g1 CHROMAT_FILE:
MSMg01no510_a19.g1 PHD_FILE: MSMg01no510_a19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:39:31 2005
(256 letters)
>mm_chr18_20808548_20809203
Length = 656
Score = 495 bits (256), Expect = e-144
Identities = 256/256 (100%)
Strand = Plus / Minus
Query: 1 attttatgcctctgtcagcagtttacccttgtcttgaagaattatagaattttagaattt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 456 attttatgcctctgtcagcagtttacccttgtcttgaagaattatagaattttagaattt 397
Query: 61 ctgacctgaaagcatcaggccaaccttccttgcattgactgacagtgtcagttcaaagag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 396 ctgacctgaaagcatcaggccaaccttccttgcattgactgacagtgtcagttcaaagag 337
Query: 121 ttgagttagcttgcatggattgatgtctggcaggcccgaaagcttggaatgtgttagctt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 336 ttgagttagcttgcatggattgatgtctggcaggcccgaaagcttggaatgtgttagctt 277
Query: 181 ttacacatgtgaccctgggcacacatcttagatcttggaaacagagtagccaggcttgag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 276 ttacacatgtgaccctgggcacacatcttagatcttggaaacagagtagccaggcttgag 217
Query: 241 caattaacctctcaaa 256
||||||||||||||||
Sbjct: 216 caattaacctctcaaa 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 256
Length of database: 656
Length adjustment: 9
Effective length of query: 247
Effective length of database: 647
Effective search space: 159809
Effective search space used: 159809
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
